Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01783 ATGAAACCTCTGTTTCATCCATCTTCTTTTTGCTTTTTCTATGCGGTACTTTTGATGATCTTCCTCATCAATATTCCAACGTGTCTATGCGAGGATGATGAGTACACAAACTGTAACACCGCTTTTTCCTGCGAAGACAATATCAAAGACCTCAAGTATCCGTTCTGGGGAGAAAGCAGAGAAAGTTATTGTGGTGGTGTTGCTGCTGATCCTATTACTACGAAGCTTACATGCGAAAATAAAGTTTCAAAGATCACAATCAATAACCTTAAATATCGTATTCTTGGATGGGACAATAAAACACAGATACTCACAGTGGCTAGAGACGATTATTCAGATGGTGATGTCTGTGCTGGGAATAACAATGGCCAGAACAGCACATTTGATAACAGTACTAAATTTCAACGTTACAATGATGTTGCTAACGTAACTCTCTTGTACGGTTGCAATGTTGGAGCTATAAATGTACTGCCTCCATTTTATGATATTGACTGTGGCAAAAGTAAATATATTGTCTACACCGTTGTTTATTCTGATTCATTCTCTGCCTTCTGTGCTCCGACTCATACTGTCGTGATTCCAATTTTGGAAAGCCTAGCTCAACAACTGGGATCTGGCAATGGACTACTGAGCAATGTATTAAAAAAATCATTACAAAGCGGTTTTGAGTTGAAATGGAGCGGAAACTATGGGGAATGTGAGAAGTGCGTTACTTCAGGTGGAGCATGTGGGAATGAAGGAAACACTCTATTCAGATGTTTCTGCCCTGATGGAATTCATGCAACTTCATGCCTTTCACAAGTGCTCTCACCCTCAAGTCAAAGCTCTATTAAAGGCCGTGTAATAGGCGGCGTAGTTGCAGGAGTTGCAGCCGTTGTTTGCATTCTTGGCTTTGCATGCTTAGTGGTGCGGAGAAGAAAGAAAAATCTTGAGAAATCTAGAAGCAGGGTCCCCTTCATGCCTTCTTCAAGCAGTGGCACTGGCACCGGCACTCTAACCTCCACTACTAATTCGTCTCAGAGTTTTCCTTCTTACCCCTCTTCCAAATTGGACGCAATGCCCAAGAGTTTCTACTTTGGTGTTCAGGTATTTACCTATGATGAGCTAGAAGAAGCTACCAACAATTTCGACGCCTCTAAAGAACTTGGAGATGGAGGTTTTGGCACAGTTTACAAAGGTGATCTCAAAGATGGACGTGTGGTTGCAGTGAAACGCCATTACGAAAGCAATTATAAGCGTGTGGCGCAGTTCATGAATGAAGTTGAGATTCTAGCGAAGTTAAGGCACAAGAACCTGGTTACACTCTATGGATGCTCCTCTAAACACAGCAGAGAGCTTCTCCTTGTTTATGAGTACATACCAAATGGAACAGTAGCTGATCATATTCACGGGAAGCAATCAAGTTCATATTTACTTCCTTGGTCCGTAAGATTGAACATTGCACTAGAAACAGCTGAAGCACTAGCCTATCTCCATGCATCCGATGTCATACACCGTGACGTTAAATCCAACAACATTCTCCTAGATGAAAAATTTCATGTTAAGGTTGCTGATTTCGGTCTGTCAAGGTGGCTTCCGAGCGATGTCACGCATGTATCAACAGCTCCACAAGGAACACCTGGTTATGTTGATCCTGAGTATTATCAAACTTACCAACTCACTGACAAGAGTGATGTTTATAGCTTTGGCGTAATCTTAGCCGAGCTTATATCGTCGTTACAAGCTGTTGATATTACCAGGCACCGCAGCGACGTGAACTTGGCGAATATGGCTGTCAACAAGATTCAGGGCCAAGAATTGCATGAGTTAGTTGATCCATTTCTTGGATATGAAAAAGACAGTGCTGTGAGGAAGATGACAACAGCAGTTGGTGAATTGGCATTTAGATGTTTGCAGCAGCAAAGAGACATGAGACCTTCAATGGATGAGGTTGTGGAGGTATTAAGAGCAATCAAGAGTGATGGACTTGAAACACGGGAATCAAGAGTATTCGATGTTGTTGTTAGAACAGATGAACTTGTACTCTTGAAGAAGGGTCCTTATCCAGGCTCACCAGATTCTGTTGCTGACAAATGGGTTAGCGGTTCTTCTACATCTACTTCTTCATAG 2109 0.4211 MKPLFHPSSFCFFYAVLLMIFLINIPTCLCEDDEYTNCNTAFSCEDNIKDLKYPFWGESRESYCGGVAADPITTKLTCENKVSKITINNLKYRILGWDNKTQILTVARDDYSDGDVCAGNNNGQNSTFDNSTKFQRYNDVANVTLLYGCNVGAINVLPPFYDIDCGKSKYIVYTVVYSDSFSAFCAPTHTVVIPILESLAQQLGSGNGLLSNVLKKSLQSGFELKWSGNYGECEKCVTSGGACGNEGNTLFRCFCPDGIHATSCLSQVLSPSSQSSIKGRVIGGVVAGVAAVVCILGFACLVVRRRKKNLEKSRSRVPFMPSSSSGTGTGTLTSTTNSSQSFPSYPSSKLDAMPKSFYFGVQVFTYDELEEATNNFDASKELGDGGFGTVYKGDLKDGRVVAVKRHYESNYKRVAQFMNEVEILAKLRHKNLVTLYGCSSKHSRELLLVYEYIPNGTVADHIHGKQSSSYLLPWSVRLNIALETAEALAYLHASDVIHRDVKSNNILLDEKFHVKVADFGLSRWLPSDVTHVSTAPQGTPGYVDPEYYQTYQLTDKSDVYSFGVILAELISSLQAVDITRHRSDVNLANMAVNKIQGQELHELVDPFLGYEKDSAVRKMTTAVGELAFRCLQQQRDMRPSMDEVVEVLRAIKSDGLETRESRVFDVVVRTDELVLLKKGPYPGSPDSVADKWVSGSSTSTSS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01783 702 ProSiteProfiles Protein kinase domain profile. 376 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01783 702 Gene3D Transferase(Phosphotransferase) domain 1 453 662 - -
Vifa5g01783 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Vifa5g01783 702 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 698 IPR044652 GO:0004672
Vifa5g01783 702 Gene3D Phosphorylase Kinase; domain 1 349 452 - -
Vifa5g01783 702 MobiDBLite consensus disorder prediction 679 702 - -
Vifa5g01783 702 CDD STKc_IRAK 382 648 - -
Vifa5g01783 702 MobiDBLite consensus disorder prediction 316 345 - -
Vifa5g01783 702 SUPERFAMILY Protein kinase-like (PK-like) 356 652 IPR011009 -
Vifa5g01783 702 Pfam Wall-associated receptor kinase C-terminal 182 258 IPR032872 -
Vifa5g01783 702 SMART serkin_6 376 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01783 702 MobiDBLite consensus disorder prediction 313 345 - -
Vifa5g01783 702 Pfam Protein kinase domain 378 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01783 702 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Vifa5g01783 702 FunFam Wall-associated receptor kinase-like 20 453 661 - -
Vifa5g01783 702 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 349 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01783 Vifa-Chr5 521504756 521510279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01783 42 702 Receptor kinase-like Gene Family AT1G25390 40.976 2.75e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa5g01783 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01783 - - mtr:11435688 747.273