Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01778 ATGAATATAATCTACTCTTCTATACTACATAACAAAATTAAATGTTCAAAACATAACTGGAGGCTTGTTGTTATAGGTGCTGCAGGATTTGGAGTAACAATTTTCTTTATTATCACAATTATTGTGATTAAAAGGGGTACATGTAGACAGGAAAAGAGTATTTTTAGAAAAAGAAGAAAGCTTGTGGACAACAATGTGGAAATTTTCATGCAAAATCATAATTTATACATGCCAAGAAGATATAGTTATGCAGAAGTAAAAAGGATTACAAACTCATTACGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTAAACGATGGTCGTCAAGTGGCGGTGAAACTTATAAATGAATCAAAGGGAAATGGAGAAGAGTTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTTTTAGGTTTTTGTTATGAGGTAAACAAAAGAGCACTAATATATGAGTTCATGCCCAAAGGATCATTGGATAAGTTCATCTATAAAAGTGAATTTCCTAATCCTATTTGCGATTTTGATTGGAATACTTTGTTCGAAATTACAATAGGCATTGCTAGAGGACTAGATTACTTGCATCAAGGATGCAACTCAAGGATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAAATTTTTGCCCAAAAATATCTGATTTTGGTTTGGCTAAAATATGTCAAAAGAAGGATAGTACCGTGTCAATACTAGGGGCAAGAGGAACTATAGGATATATGGCCCCTGAAATATTCAGTAGAGCATTTGGTGGAGTTTCTTACAGTTACGGAATGCTGATTCTTGAGATGATAGGAGGAAGAAAGAACTATGACACTGGAGGGTCATGTACTTCTGAAATGTATTTTCCTGAATGGATTTATAAAGATCTTGAGCAAGGTAATACTAGTAATACTCTTTTAAATAGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAATTCATCAGATAGACCACCAATGAATAAAGTAATCGAAATGCTCCGAGGACCACTCTCATCAGTGCCATATCGTCCAATGCCAGTCTTGTTTTCTCCTGAAATGCCACCACTGCAAGTAGACACTATATCCTCTTCCGATTTGTACGAGACAAATTCAGTTACAGTATCAAAATAA 1221 0.3464 MNIIYSSILHNKIKCSKHNWRLVVIGAAGFGVTIFFIITIIVIKRGTCRQEKSIFRKRRKLVDNNVEIFMQNHNLYMPRRYSYAEVKRITNSLRDKLGQGGYGVVYKASLNDGRQVAVKLINESKGNGEEFINEVASISRTSHMNIVSLLGFCYEVNKRALIYEFMPKGSLDKFIYKSEFPNPICDFDWNTLFEITIGIARGLDYLHQGCNSRILHLDIKPQNILLDENFCPKISDFGLAKICQKKDSTVSILGARGTIGYMAPEIFSRAFGGVSYSYGMLILEMIGGRKNYDTGGSCTSEMYFPEWIYKDLEQGNTSNTLLNSLTISEEENDMVRKITLVSLWCIQTNSSDRPPMNKVIEMLRGPLSSVPYRPMPVLFSPEMPPLQVDTISSSDLYETNSVTVSK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01778 406 ProSiteProfiles Protein kinase domain profile. 91 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01778 406 SMART serkin_6 91 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01778 406 SUPERFAMILY Protein kinase-like (PK-like) 67 363 IPR011009 -
Vifa5g01778 406 ProSitePatterns Protein kinases ATP-binding region signature. 97 119 IPR017441 GO:0005524
Vifa5g01778 406 Gene3D Phosphorylase Kinase; domain 1 63 165 - -
Vifa5g01778 406 FunFam PR5-like receptor kinase 166 372 - -
Vifa5g01778 406 FunFam serine/threonine-protein kinase PBS1-like 60 165 - -
Vifa5g01778 406 Pfam Protein kinase domain 95 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01778 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vifa5g01778 406 Gene3D Transferase(Phosphotransferase) domain 1 166 370 - -
Vifa5g01778 406 PANTHER RUST RESISTANCE KINASE LR10-RELATED 63 380 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01778 Vifa-Chr5 520170356 520172382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01778 63 395 Receptor kinase-like Gene Family AT5G38280 56.305 1.16e-125 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa5g01778 Pkinase 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01778 - - psat:127126843 693.345