Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01774 ATGAAGATATTACTAACCCAAAGAACTGTTTTGTTATCCATCCTCTTGTTCATTATTTCAGTTGCTATTACGAATGCAGAATACGAAGAGGCAGATTACATGTCCGATCTTATAAAATCACTCGCCCCAACTCCCTCTAACTGGTCTAATACCACTGACTACTGCAAATGGAAAGGCATCTTTTGCCAATCTAATCGAGTTGTTTCCATCAACCTTTCATCAAGCTCACTCACCGGAACACTCCCTCCCCATCTCTACCCTCTTACTAATCTCACTCACATCGATCTCCACAATAATTCACTCAACGGTGCTTTGCCTAACTTTTCTGGTCTAGGCAACCTGGAAGCCGTAAACCTTGGCCACAATAAGTTCAACACAATCCCAAACGGTTGCTTTCAAGATATTCCATCTCTTCAAGTACTTAACCTTAGCAATAATTTGAATCTACAACGTTGGTCTTTTACTAAGAATTTAATTGATTCCCTCTTTTTGCGTGTCCTCGATCTTGAAGCTACAAATATCGAAGACTCGTTACCATCGGATATGTTTGATCCCTACCCGAGGCTGCATACTGTTGTTTTTTCGTACAACAACATCATGGGACCACTTCCTCGGTCTCTTGGGGATTCCGTAGTAAGATATTTAAGAGTCAACAACCAAAAGAATCCGAATGGTTTTACGGAAACAATTGACCTGATATCATCCATGAGATTCTTGTCTCAAGCGTGGCTTAACAACAACTGTTTTTGGGGTTCAATTCCTAACATGTTTACTTCAAAATATTTGTTTGATCTGCAGCTTCAATCAAATTACTTAAATGGTTTTGTTCCACCTTCATTGCTAGATCTCACTAGCTTGAACAACATCTCTTTGGACAACAATCAACTTCAAGGACCAATACCTGTGTTTCCGAAGCGCGTCAAGGCAACTTGGAAAGGAAATTATTTTTGTGAAAGCCATGCTGGACATTGTGATCCACAAATTACATTTTTGCTTCAGATTTTTAAAGATGCTGGATTTTCTCCTTTATTTACAAGGAGTGGAGGTAACCAAAGTGATGCTTGTATAGGCTGGTTTTGGATTAAGTGTCGAAGAGGGAAGATTGTGAGCGTTGATAACTACAGTTTTATACCAGACAGTCTAACAACATTGCCTCATCTTCAACTTCTTGATATTTCTCATAACAATCTGACTGGACAAATTCCCAAATTTTCATCCAAGGTTAAGTTATTTACCCAAGGAAATCCTTTGCTTCGCCTAAATATTTCCGGAGACGGTAGAGGTAAAAATGCAACTAATTCCGGATATGATGATGTTCAAACAAGAAAAAATGGAGGTGAAAATATTGGCTTAATTAAATATGTTTGGATAATAGGAGCAATTGTTGGATTTATAATACTTATTGGATTGGTTGTTTACTATGGTAAGAAGTGTTTTATTTTAGTACAAAGGTGGATATTTAGGGGAACAACAAAATCTATTAATCATAATGTGGAGAATTTTATGGAAAGTTATAAATTGTCAGTGCCGATAAAACAATATAGATATGCAGAAGTGAAAAGAATGACAAACTCATTCCGAGATAAATTAGGTCAAGGAGGATATGGGACTGTGTACAAAGCAAGCTTATCTGATGGTCGTCAAGTGGCTGTGAAAGTAATAAAAGAGTCTAAAGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGTATTAGTAGAACGTCACACGTCAATATTGTCTCGCTTTTGGGTTTTTGTTATGAGAACAAAAGAGCGCTAATATATGAATTCATGTCCAAAGGGTCATTGGATAATTTCATCCTTAAAAGTGGATTTTCTGATTCTGTTTGTAGTTTGGATTGGAACACATTATCCAAAATTGCAATGGGCATTGCTCGTGGATTAGAATACTTGCATCAAGGATGTATTTCAAGGATATTGCATCTTGATATCAAACCTCAAAATATTCTTTTGGATGAGGATTTTTGCCCAAAAATATCTGATTTTGGACTGGCTAAAATATGTCAAAGAAATGATAGTGTTGTGTCAATACTTGGTGCGCGAGGAACTATAGGATACATAGCACCAGAAGTATTTAGTCGAATAAATGGCGGAGTTTCTCACAAATCAGATGTATACAGTTATGATTGGATTTATAAGGATCTTGAGCAAGATAATAACTTTGTGAATTGTGTAGCAAATTCTGAGGAAGAGAATGATATGGTGAGAAAAATTACTATGGTAAGTCTATGGTGCATTCAAACAAACCCATCAGATAGACCTTCAATTAGTAAAGTAATAGAAATGCTACAAGGACCACTTCGGTCGGTTCCATATCCTCCGAAGCCTTTTTTATATTCTCCTGAAATTCCAATACTCCAAACTTCATGTGTGCCTTCAAGCAGTTTCTCAGAGACAAAGTCATCAACCTTATCGGGGAATGGTTCCTTAAAAACAAACAAGTTCAGCAAAGACAACAATGAAATTGTGATTGTAATGTAA 2502 0.3669 MKILLTQRTVLLSILLFIISVAITNAEYEEADYMSDLIKSLAPTPSNWSNTTDYCKWKGIFCQSNRVVSINLSSSSLTGTLPPHLYPLTNLTHIDLHNNSLNGALPNFSGLGNLEAVNLGHNKFNTIPNGCFQDIPSLQVLNLSNNLNLQRWSFTKNLIDSLFLRVLDLEATNIEDSLPSDMFDPYPRLHTVVFSYNNIMGPLPRSLGDSVVRYLRVNNQKNPNGFTETIDLISSMRFLSQAWLNNNCFWGSIPNMFTSKYLFDLQLQSNYLNGFVPPSLLDLTSLNNISLDNNQLQGPIPVFPKRVKATWKGNYFCESHAGHCDPQITFLLQIFKDAGFSPLFTRSGGNQSDACIGWFWIKCRRGKIVSVDNYSFIPDSLTTLPHLQLLDISHNNLTGQIPKFSSKVKLFTQGNPLLRLNISGDGRGKNATNSGYDDVQTRKNGGENIGLIKYVWIIGAIVGFIILIGLVVYYGKKCFILVQRWIFRGTTKSINHNVENFMESYKLSVPIKQYRYAEVKRMTNSFRDKLGQGGYGTVYKASLSDGRQVAVKVIKESKGNGEEFINEVASISRTSHVNIVSLLGFCYENKRALIYEFMSKGSLDNFILKSGFSDSVCSLDWNTLSKIAMGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQRNDSVVSILGARGTIGYIAPEVFSRINGGVSHKSDVYSYDWIYKDLEQDNNFVNCVANSEEENDMVRKITMVSLWCIQTNPSDRPSISKVIEMLQGPLRSVPYPPKPFLYSPEIPILQTSCVPSSSFSETKSSTLSGNGSLKTNKFSKDNNEIVIVM 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01774 833 FunFam Os07g0541700 protein 598 690 - -
Vifa5g01774 833 SMART serkin_6 524 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01774 833 ProSiteProfiles Protein kinase domain profile. 524 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01774 833 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Vifa5g01774 833 Pfam Protein kinase domain 528 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01774 833 Gene3D Ribonuclease Inhibitor 328 424 IPR032675 -
Vifa5g01774 833 SUPERFAMILY L domain-like 376 404 - -
Vifa5g01774 833 Pfam Leucine rich repeat N-terminal domain 36 62 IPR013210 -
Vifa5g01774 833 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
Vifa5g01774 833 Gene3D Transferase(Phosphotransferase) domain 1 598 777 - -
Vifa5g01774 833 Gene3D Ribonuclease Inhibitor 31 324 IPR032675 -
Vifa5g01774 833 SMART LRR_typ_2 135 156 IPR003591 -
Vifa5g01774 833 SMART LRR_typ_2 111 134 IPR003591 -
Vifa5g01774 833 SMART LRR_typ_2 88 110 IPR003591 -
Vifa5g01774 833 SMART LRR_typ_2 384 408 IPR003591 -
Vifa5g01774 833 SUPERFAMILY Protein kinase-like (PK-like) 512 806 IPR011009 -
Vifa5g01774 833 SUPERFAMILY L domain-like 43 303 - -
Vifa5g01774 833 PANTHER OSJNBA0070M12.3 PROTEIN 11 771 - -
Vifa5g01774 833 Pfam Leucine rich repeat 108 146 IPR001611 GO:0005515
Vifa5g01774 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01774 Vifa-Chr5 520027169 520036617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01774 460 809 Receptor kinase-like Gene Family AT1G66910 47.769 1.39e-109 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa5g01774 Pkinase 7.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01774 - - cam:101489592 944.495