Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01772 ATGTCCAACGGGTCATTGGACAATTTCATCCTTAAAAGTGGGTTTCCTAATGCTATTTGTTGCTTGGATTGGAACACATTGTCCAAAATTACAATCGGCATTGCTCGTGGATTAGAATATTTGCACCGTGCTTCAAGAATTTTGCATCTTGATATCAAACCTCAAAACATTCTTTTGGATGAAGATTTTTGCCCAAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAGGAATGATAGTGTTGTCTCTATACCTGGCGCAAGAGGAACTATAGGATACATAGCACCAGAAGTATATAGCCGAGCACATGGTGGAGTTTCTCACAAATCTGATGTGTACAGTTATGGTATGTTAATTTTAGATATGATCCGAAGAAGAAAGGATTCTAACACGAAAGATTCATGTACTTCTGTAATGTATTTTCCAGACTGGATTTATAAGGATCTTGAGCAAGATAATAACCTTGAGAATTGTTTAGCAAATTCAGAGGAAGAGATTGATTTGGTGAGAAAAATTACTATGGTGAGTCTATGGTGCATTCAAATGAAACCATCAGATAGGCCACCAATTAGTAAAGTAATAGAAATGTTATCAGCACCACTTGAGTCAGTTCCATATCCTCCAAAGCCTTTCTTATATTCTCCAGAAATTCCATTAGTACAAACTTCATCAACCTTATCAGGGAATTGTTAG 696 0.3592 MSNGSLDNFILKSGFPNAICCLDWNTLSKITIGIARGLEYLHRASRILHLDIKPQNILLDEDFCPKISDFGLAKICQRNDSVVSIPGARGTIGYIAPEVYSRAHGGVSHKSDVYSYGMLILDMIRRRKDSNTKDSCTSVMYFPDWIYKDLEQDNNLENCLANSEEEIDLVRKITMVSLWCIQMKPSDRPPISKVIEMLSAPLESVPYPPKPFLYSPEIPLVQTSSTLSGNC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01772 231 Gene3D Transferase(Phosphotransferase) domain 1 1 205 - -
Vifa5g01772 231 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 215 IPR045874 GO:0004672
Vifa5g01772 231 PIRSF ILK 1 206 - -
Vifa5g01772 231 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01772 231 SUPERFAMILY Protein kinase-like (PK-like) 1 225 IPR011009 -
Vifa5g01772 231 FunFam PR5-like receptor kinase 1 208 - -
Vifa5g01772 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Vifa5g01772 231 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01772 231 Pfam Protein kinase domain 4 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01772 Vifa-Chr5 519936807 519937502 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01772 1 213 Receptor kinase-like Gene Family AT4G18250 55.204 6.49e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa5g01772 Pkinase 1.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01772 - - mtr:11438961 337.421