Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01770 ATGGCCTATGTTGATTGCCATGAAAACTCCACCCCTACCTCTATCAATACTGTAAAACTTTTTGGCATTAACATTCAAGAAGAAGCTTGTTTGAATCAATCTCCATCATCACTCTCACAATCCCGATCAGAATTATCTGAGTCTTTGAATGGGAAAAAACTATACGAGTGTCAATATTGTGGTAGAGAGTTTGCGAATTCGCAAGCATTAGGAGGACACCAAAACGCGCATAAGAAAGAAAGACAGCTTCTGAAGCGTGCTCAAATGAAAGCGGCTCGGAGCTTTATACCGTCGCATTATCATAATACATTTATGTTTCCTCCACCGCAGCAATATCATTTCGCCGGTGGTGTACCGTCTCAAGCTCCTTCGTTGTCGTGGCTATATACGATGCCAGGAGCAAGTTCGGGAGCTCATGGCCATCAGCATCAAGAGAGACTTGGTGGATTCAACAGAGGCAGCGGATGTAGTGAAGGATTTGGTTTAAATTTGCATCTTGGTTTATAA 507 0.428 MAYVDCHENSTPTSINTVKLFGINIQEEACLNQSPSSLSQSRSELSESLNGKKLYECQYCGREFANSQALGGHQNAHKKERQLLKRAQMKAARSFIPSHYHNTFMFPPPQQYHFAGGVPSQAPSLSWLYTMPGASSGAHGHQHQERLGGFNRGSGCSEGFGLNLHLGL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01770 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Vifa5g01770 168 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Vifa5g01770 168 FunFam Zinc finger protein-like 51 78 - -
Vifa5g01770 168 SUPERFAMILY beta-beta-alpha zinc fingers 51 82 IPR036236 -
Vifa5g01770 168 Gene3D Classic Zinc Finger 35 103 - -
Vifa5g01770 168 PANTHER ZINC FINGER PROTEIN 5 11 145 IPR044299 GO:0010090
Vifa5g01770 168 Pfam C2H2-type zinc finger 55 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01770 Vifa-Chr5 519745841 519746347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01770 13 100 C2H2 Transcription Factor Family AT1G67030 56.818 1.96e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g01770 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01770 - - tpra:123891304 211.46