Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01762 ATGGCTTCCACCACCAATACAGATTTTGCATATTTGGAACACGTTCAGCAATACCTTCTTTGTGAAGATTCCTACCTTCTAACATTTTCTCAACCTTTTTCAAGCCCTAAAAGTGAGGGTGATTCCCACAGGTCTGCGGGAGCGGGTGAGGTAAGCGCCCCTCCACCGTCTTGGAAGCGGTACAAGGGCGTTAGGCGTAGGCCATGGGGGAAGTTCGCGGCGGAGATAAGAGATCCAAAAAAGAACGGTGCTAGGGTTTGGTTAGGAACTTATTTGACCGAGGAGGAAGCAGCTGTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAAGCCAAGGTTAATTTTCCCCACCTCATTGGCAACGACGCGTCTATATCGGAGGCAAAGAGAGAGGTGGTTTTGAAACGGGACTCACCCGAACGGTCTTCGTCGGAGGGAAGTTGTGAGTCATTGTCACCTGGGTCGAAGAGGAGGAGGGGTATGGCTGATCTACTTAACAAATTAGCCAAGAATAGAAGTCAAGCCATGGCGGTTAAAATTAAAAAGACCTCACTGGAAAATGATTTTGAGCAATGGGTGAATGAGTTGAGTGATTGCACTCTGATCTGGAGTTCTTAG 624 0.4808 MASTTNTDFAYLEHVQQYLLCEDSYLLTFSQPFSSPKSEGDSHRSAGAGEVSAPPPSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAAVAYDKAAFKMRGQKAKVNFPHLIGNDASISEAKREVVLKRDSPERSSSEGSCESLSPGSKRRRGMADLLNKLAKNRSQAMAVKIKKTSLENDFEQWVNELSDCTLIWSS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01762 207 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Vifa5g01762 207 MobiDBLite consensus disorder prediction 36 60 - -
Vifa5g01762 207 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Vifa5g01762 207 PANTHER DNA-BINDING DOMAIN 49 177 IPR044808 GO:0003700|GO:0009873
Vifa5g01762 207 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Vifa5g01762 207 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vifa5g01762 207 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Vifa5g01762 207 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Vifa5g01762 207 MobiDBLite consensus disorder prediction 133 159 - -
Vifa5g01762 207 FunFam Ethylene-responsive transcription factor 2 59 119 - -
Vifa5g01762 207 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Vifa5g01762 207 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01762 Vifa-Chr5 514357451 514358074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01762 32 147 AP2-EREBP Transcription Factor Family AT2G44840 57.759 1.04e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g01762 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01762 K09286 - gmx:102663872 226.483