Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01760 ATGGCTTCTACCACCAAAGACTCAGATTTGGCATATTTGGAACACATTCAACAATACCTTCTTTTCGATGATTCCAACCTTCTAACATCTTATCAACCTTTTTCAAGTCCTAAATGTGATAGCGATTCCGGCACATCTGTTGGGACGGATAAGGTAAGCGCACCTCCGGTGTCATGGAAGCGGTACAAGGGAGTGAGACGTAGGCCATGGGGGAAGTTCGCCGCAGAGATCAGAGATCCTAAAAAGAATGGTGCTAGGGTTTGGCTTGGAACTTATGTCACAGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAGGCTAAGGTTAATTTTCCCCACCTCATTGGCAACGACGTGTCTACGTCGATGCCAGAGAGGGAGGGGATTTTAAAACGAGACTTGCCCGAACCTTCTTCGTCGGAGGGGAGTTGTGAGTCATCGTCATCCGGGTCGAAGAAGAGGAAGGGCATGGCTGATCTACTTAACAAATTGGCGAAGAGTAGATGTCAAGCCATGGTGGTTGAGAATGAAAAGACCTTACAACCAAATGATTATGAGCAATGGGTGAATGAGTTGAATGATTGCACTCTAATCTTGAGCTCCTAG 627 0.4673 MASTTKDSDLAYLEHIQQYLLFDDSNLLTSYQPFSSPKCDSDSGTSVGTDKVSAPPVSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGQKAKVNFPHLIGNDVSTSMPEREGILKRDLPEPSSSEGSCESSSSGSKKRKGMADLLNKLAKSRCQAMVVENEKTLQPNDYEQWVNELNDCTLILSS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01760 208 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vifa5g01760 208 MobiDBLite consensus disorder prediction 146 160 - -
Vifa5g01760 208 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Vifa5g01760 208 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vifa5g01760 208 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
Vifa5g01760 208 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Vifa5g01760 208 MobiDBLite consensus disorder prediction 138 163 - -
Vifa5g01760 208 Coils Coil 164 184 - -
Vifa5g01760 208 PANTHER DNA-BINDING DOMAIN 53 181 IPR044808 GO:0003700|GO:0009873
Vifa5g01760 208 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Vifa5g01760 208 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Vifa5g01760 208 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Vifa5g01760 208 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01760 Vifa-Chr5 513803871 513804497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01760 54 148 AP2-EREBP Transcription Factor Family AT2G44840 64.211 2.24e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g01760 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01760 K09286 - gmx:102663872 234.187