Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01759 ATGGCTTTCACCACCAATGACTCAGATTTTGCATATTTGGAACACATTCTCTTTGATGATTCCAGCATTCTTACATCTCATCAAGCTTTCCCAAGCCCTAAATGTGGCAGTGATTCAGACATTGCTGTAGAGGTGCCTGAAGTAAGCACGCCTCCGATATGGAAGCGATACAAGGGCGTGAGGCGTAGGCCATGGGGAAAATTCGCGGCAGAGATAAGGGATCCAAAAAAGAATGGCGCTAGAGTTTGGTTAGGAACTTATTTAACCGAGGAGGAAGCAGCATTGGCTTACGATAAAGCTGCTTTCAAGATGCGTGGCCAGAAAGCCAAGCTTAATTTTCCTCACCTCATTGGCAACGATGTGTCCATATCGGAGCCAAAGAGGGAGGTGGTTTCGAAATGGGACTCACCAGAACTTTCCTCGTCCGAGGGAAGTTGTGAGTCGTCGACATTGGGATCGAAGAAGAGGAGGGGTATGGCTGACCTACTTAACAAATTAGCTAAGAATAGAAGTCAAGCAATGGTGGTTGAGAATGAAAAGTCCTCACAAGCAGATGATTTTGAGCAATGGTTTCCTAATATTTTTGCATTACCCCGTTGA 600 0.455 MAFTTNDSDFAYLEHILFDDSSILTSHQAFPSPKCGSDSDIAVEVPEVSTPPIWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGQKAKLNFPHLIGNDVSISEPKREVVSKWDSPELSSSEGSCESSTLGSKKRRGMADLLNKLAKNRSQAMVVENEKSSQADDFEQWFPNIFALPR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01759 199 CDD AP2 55 116 IPR001471 GO:0003700|GO:0006355
Vifa5g01759 199 MobiDBLite consensus disorder prediction 135 152 - -
Vifa5g01759 199 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Vifa5g01759 199 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vifa5g01759 199 PRINTS Ethylene responsive element binding protein signature 96 116 IPR001471 GO:0003700|GO:0006355
Vifa5g01759 199 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Vifa5g01759 199 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Vifa5g01759 199 MobiDBLite consensus disorder prediction 134 157 - -
Vifa5g01759 199 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Vifa5g01759 199 PANTHER DNA-BINDING DOMAIN 46 177 IPR044808 GO:0003700|GO:0009873
Vifa5g01759 199 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Vifa5g01759 199 FunFam Ethylene-responsive transcription factor 2 55 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01759 Vifa-Chr5 513550596 513551278 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01759 56 119 AP2-EREBP Transcription Factor Family AT2G44840 82.812 3.15e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa5g01759 AP2 9.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01759 K09286 - gmx:102663872 216.468