Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01757 ATGTTGTTTTCTAGCACCAAAGATTCAGAGTTTGCATATTTAGAACACGTTCAACAATACCTTCTTCGTCATGATTCCAACATCCTCAGTATTCAAAGCCCAACTATTAATTCTAACACAACTGCATCTCCACGTGAAGTGCACGCACCTCCCACGTGGAAGCACTACCGGGGTGTGAGGCGTAGGCCGTGGGGAAAGTTTGCGGCAGAGATCAGAGATCCGAAGAAGAAAGGTGCTAGGGTTTGGCTTGGAACTTATTTAACCGAAGAAGAAGCTGGTATGGCTTATGATAAAGCTGCTTTTAAGATGCGTGGCCGAAAGGCCAAGGTCAATTTTCCCCATCTTATTGGCTCTGACGTGTACACGCCAGAGCCAAAAAGAGAGATGACTTTGGAACAAGAATCGACTGAAATTTCTTCTTCATCGGATTATAGCTGTGAGTCATTATCACAAGGTTCAAAGAGGAAGAGGAGCATGGCTAATCTACTTAACAAATTAGCCAAGAATAGAAGCCAAGCTATGGTGGTTGAAAGTGAAATGGCCTCACAAGAAAATGCTGTCGAACAATGGTTGAATGAGTTGAGTGATTGCTCTCTAATGTGGTGCTTCTAG 612 0.4363 MLFSSTKDSEFAYLEHVQQYLLRHDSNILSIQSPTINSNTTASPREVHAPPTWKHYRGVRRRPWGKFAAEIRDPKKKGARVWLGTYLTEEEAGMAYDKAAFKMRGRKAKVNFPHLIGSDVYTPEPKREMTLEQESTEISSSSDYSCESLSQGSKRKRSMANLLNKLAKNRSQAMVVESEMASQENAVEQWLNELSDCSLMWCF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01757 203 MobiDBLite consensus disorder prediction 125 152 - -
Vifa5g01757 203 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Vifa5g01757 203 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Vifa5g01757 203 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700|GO:0006355
Vifa5g01757 203 CDD AP2 54 115 IPR001471 GO:0003700|GO:0006355
Vifa5g01757 203 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Vifa5g01757 203 FunFam Ethylene-responsive transcription factor 2 54 114 - -
Vifa5g01757 203 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Vifa5g01757 203 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Vifa5g01757 203 Coils Coil 173 193 - -
Vifa5g01757 203 PANTHER DNA-BINDING DOMAIN 42 178 IPR044808 GO:0003700|GO:0009873
Vifa5g01757 203 MobiDBLite consensus disorder prediction 134 152 - -
Vifa5g01757 203 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01757 Vifa-Chr5 512894147 512894758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01757 41 140 AP2-EREBP Transcription Factor Family AT2G44840 55.652 3.33e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g01757 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01757 K09286 - gmx:102663872 229.18