Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01748 ATGGAGAGTGCAACCAAGCCGAAAGTACTTCCTCGGACCTTGCCTGTCCTAGTTGAGGTTTCTGATGCAGACTTAGCTGTTATAAGGGAAGCTAGTCAGAGGTTAATGTCGGGTCAGGATGTTTCATGTGCGCGTGCGGTTTCAAAAGCACGGGATCGCCCTACGACGCGTTTGGCCTCCATCAGAGAAGCGGCGCAGCTATCAAATGGAAGAATTGTTTTGGCAAGAGAAGATATGGAATTCGATAAACAATCCTCTCGAGAGCCTGTCTCGGCTACGCCTACAGATCACGAAGAACTCTTGCCTGATGTTGAGACATTGAAGAGGAGTACTGATTCTTTTGGGGAAAATGATCCGAGCTCATTTGCTGGTGCTAGTCATCCCCAAGAGCCTGTCGATACTGATCTCATGAGAGCGGTTTATATACCGATAGGTCGAAATAAATCTGAAGCTGGATTGTACATGAAGGGTCCTTTCCTTGAAGATCTTTCAATTCGTAATCTCACTAAGAAACCAAGCCTAGCTGTTGTTTCGCCTGCAGAAAGTACTCTTGAAGAATCAAATGACATGGGGAAGTTAGCATCACCGGGTTCAGGTGCTCCTGCGTTGCAGAATAAAGGGAATTCTCTACCTTGCCCAGATTCTGAGGAGAACGAATGTGTATGGGATTCTTCTTTACCTCCAAGTGGAAATGCCAGTCCACATAGTAGTATTGATAGTACTAGTGTTCTCAGAACAATGAGCATTGCTAATAGTTGTGCGAGTACGTATCGTAGCGATGCATTCACTAGTGATGGCGTGATTAGTGTAGACAGGAATTGTGATAGTATTAAAGGAAGTGTAAGGGGGGATTCACTCGAGAGTGCAAAAACTAGTGCTAGTCGAGCAAGTGATAGCAGCGGCCTCAGTGATGACAGCAACTGGAGTAACATCACCGGTAGTGCTAGTAAACCACATAAAGGAAATGATCCTAGGTGGAAGGCTATCCTTGCTGTTCGAACACGGGATAGAATTTTGGGCATGAGTCATTTTAAGTTACTAAGACGACTTGGTTGTGGTGATATCGGAAGTGTGTATCTCTCTGAGCTGAGTGCAACTCGGTGTTATTTTGCAATGAAAGTTATGGACAAGGCATCCCTAGCTGCCAGAAAGAAGCTGGTTAGGGCACAGACAGAAAGGGAGATACTGCAGTTGCTCGACCATCCATTTCTGCCAACGTTGTACACACATTTTGAGACTGACCGATTCTCGTGTTTGGTAATGGAATACTGTCCGGGCGGTGATTTGCATAATTTAAGGCAACGACAACCAGGGAAACATTTCTCAGAGTATGCTGCACGCTTTTATGCTGCAGAGGTCCTGTTAGCAATTGAATATCTTCACATGCTTGGAGTTGTTTATCGAGACCTTAAACCTGAAAATGTACTTGTTCGAGAGGACGGTCACATAATGCTCTCAGACTTCGATCTTTCTCTTAGATGTATTGTTTCACCTACTCTTATCAGAACTCATGACAGCGACCCTTCAAAATGGGCAGCTGGTGGTGCATTCTGTGTCCAGCCTGCTTGTATTGAGCCTACATCTGTATGCATCCAGCCTGTCTGTTTTATGCCAAAGCTTTTTTCTCAGAAAAATAAAAACTCACGGAAGCCGAAAGCGGATCCTGGCATTACAACTAGCGCACTTCCAGAACTTCTTGCCGAGCCTACATCGGCCCGGTCGATGTCCTTCGTTGGCACACATGAGTATCTCGCCCCTGAAATAATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACATTCGGCATTTTCTTGCACGAGTTATTGTATGGTAAAACCCCTTTCAAAGGATCCGGAAACCGAGCTACGCTGTTCAATGTAGTAGGGCAGCAGCTCAAGTTTCCTGAGTCGCCAGCTACTAGCTACGCCAGCCGTGATCTAATCCGAGGTTTGCTTGTGAAGGAGCCGCAGAATCGTCTTGGAGTGAAGAGGGGTGCAACTGAGCTCAAACAGCATCCTTTCTTTGAAGGCATAAACTGGGCGTTGATTCGGTGCAGCACGCCACCGGAAATTCCAAGACCAATGGAAAATGAACTACCGGCAAAGTCTGAAGCAGTTTATAATAATAATACTGTTGGCGTTGGGAGCAATAGTAAGAAAATGGTTGGTGGTAATACCGAAACGAAGCCCGGGGGTGGTAAATATCTTGACTTTGAGTTCTTTTAG 2232 0.4574 MESATKPKVLPRTLPVLVEVSDADLAVIREASQRLMSGQDVSCARAVSKARDRPTTRLASIREAAQLSNGRIVLAREDMEFDKQSSREPVSATPTDHEELLPDVETLKRSTDSFGENDPSSFAGASHPQEPVDTDLMRAVYIPIGRNKSEAGLYMKGPFLEDLSIRNLTKKPSLAVVSPAESTLEESNDMGKLASPGSGAPALQNKGNSLPCPDSEENECVWDSSLPPSGNASPHSSIDSTSVLRTMSIANSCASTYRSDAFTSDGVISVDRNCDSIKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSASKPHKGNDPRWKAILAVRTRDRILGMSHFKLLRRLGCGDIGSVYLSELSATRCYFAMKVMDKASLAARKKLVRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHNLRQRQPGKHFSEYAARFYAAEVLLAIEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCIVSPTLIRTHDSDPSKWAAGGAFCVQPACIEPTSVCIQPVCFMPKLFSQKNKNSRKPKADPGITTSALPELLAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQNRLGVKRGATELKQHPFFEGINWALIRCSTPPEIPRPMENELPAKSEAVYNNNTVGVGSNSKKMVGGNTETKPGGGKYLDFEFF 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01748 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Vifa5g01748 743 FunFam serine/threonine-protein kinase D6PK-like 428 495 - -
Vifa5g01748 743 MobiDBLite consensus disorder prediction 81 100 - -
Vifa5g01748 743 Gene3D Transferase(Phosphotransferase) domain 1 572 695 - -
Vifa5g01748 743 MobiDBLite consensus disorder prediction 176 239 - -
Vifa5g01748 743 PANTHER FLIPPASE KINASE 1-RELATED 97 700 - -
Vifa5g01748 743 MobiDBLite consensus disorder prediction 281 322 - -
Vifa5g01748 743 MobiDBLite consensus disorder prediction 222 239 - -
Vifa5g01748 743 MobiDBLite consensus disorder prediction 110 130 - -
Vifa5g01748 743 Gene3D Phosphorylase Kinase; domain 1 342 427 - -
Vifa5g01748 743 SMART serkin_6 344 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01748 743 SUPERFAMILY Protein kinase-like (PK-like) 326 701 IPR011009 -
Vifa5g01748 743 FunFam serine/threonine-protein kinase D6PK-like 572 695 - -
Vifa5g01748 743 ProSiteProfiles Protein kinase domain profile. 344 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01748 743 Gene3D Transferase(Phosphotransferase) domain 1 428 494 - -
Vifa5g01748 743 FunFam Serine/threonine-protein kinase D6PK-like 342 427 - -
Vifa5g01748 743 MobiDBLite consensus disorder prediction 285 317 - -
Vifa5g01748 743 CDD STKc_phototropin_like 342 696 - -
Vifa5g01748 743 Pfam Protein kinase domain 574 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01748 743 Pfam Protein kinase domain 345 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01748 Vifa-Chr5 510486819 510489237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01748 49 743 AGC Kinase Gene Family AT2G44830 64.305 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa5g01748 Pkinase 3.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01748 - - gmx:100800019 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00068 4 7527277 7529931 Vifa5g01748 5 510486819 510489237 PCT