Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01741 ATGTTTAAACATCAAAACTTCACCAAGAATCTAGTTTGTTGGAAGATTCTCTTCGCGATCCTTTGGATCATTTTAACAGTATTTTTTCCTCAACAAGTAGCTAGTTTTCCCAAAATCACTTCGTTGACCTCTACTACTGTTAATGATCGAGCTGCCATTAAAGACAGTGAAGCAAATGCTTTGTTAAAGTGGAAAGACAGCTTTGAAAACAACAGCCAAGGTCTCTTCTCAAATTGGACAAAAGCTACTAGTCCATGTAAATGGGAAGGAATTCAGTGTGACAAATCAAAATCCATCACTAGCATAAATCTTGCAAATTATGGACTCATAGGTAAACTCCAAACTTTTAGCTTCTCTTCATTCCCTAACCTTCTCGGGCTAAATATCTATAACAACTCCTTTTATGGGACCATTCCTCCACAAATTGGTAACCTGTCCAAAATAAATGTTTTGAACTTTTCTAATAACCCACTAGAAGGTTCCATCCCCGAAGAAATGTGGACATTGAGGAGTTTAAAAGGCCTTGATTTTTCTGTATGTCTGCTAAGTGGACAAGTTTCTACTTCCATAGCAAACTTGACTAACCTATCCTATCTAGATTCCATGGACAACAAATTTTCTAGTGGCTATATACCTCGTGAGATAGGAAAACTCAACCACTTGGAGTATCTATCTTTTGCAGGTTGTAACCGTATTGGTCCCGTTCCCCGAGAAATTGGAATGTTGACAAAACTCGGAGTTATGGATTTGTCACATAACACTCTATCTGGTACCATTCCAGAAACAATTGGTAACATGAGCAGTTTAAATAAACTTTACCTTTCTAATAACACATTGTCTGGAACAATCCCAGTCTCCATGTGGAACATGTCTTACTTGTCTGTGATCTACCTTAGTAGCAATAAACTTTCTGGATCAATCCCTTCTTCTCTACAAAACTTGGTCAATTTGAAGGAACTTTCACTTCATTCCAACAACTTTTTTGGACCTATTCCTTCCTCAATCGGAAACTTGACAAAGCTTAGGATATTATACTTGTTCACTAATCAGTTTTCTGGATCGATTCCCGCTTCTATTGGAAATATGACCAATATGTTGGCCCTTAGTTTGTATGAAAACGATCTTTCTGGAACTATTCCTGCTACAATTGGAAATTTGACAGGGTTAATGGCCTTGGAATTGGCCACCAATAAACTTCATGGTAGCATTCCACTAAGCCTATATAACTTTACCGACTGGGGTTCTTTTACATTGGCCGAGAATGATTTCATTGGCCATTTGCCAGCTCAAGTATGTTCTGGTGGATTTCTACTATACTTCAGTGCTTTTCGCAACCATTTCACTGGTCCAGTTCCAACGAGCTTGAAAAACTGCTCTAGTATTGAAAGAATTAGGCTTCAAGGTAATCAAATAGAAGGTGATATAGCCCGAGATTTTGGTGTATATCCAAATTTGAAACACATTGATCTGAGTGACAATAAATTCTATGGTCATATTTCACCAAACTGGGGAAAGTGTCCTAATCTTAATACTTTCATGATATCCAACAATAATATCTCTGGTGGCATACCGTTAACACTTCTTGAGGCAAACCAACTAGGCGAGCTCGACCTTTCTTCAAATCACTTAACAGGAGAGCTTCCAAAGGAACTTGGATACCTGAAATCATTACTTGAAGTTAAGATCAGCAACAATCATCTTTCAGGAAATATTCCAAGTGAAATTGGATTGCTAGAGAATCTCGTAGATTTCAATGTAGGAGGAAACATGTTGAGTGGCACCATACCAAAAGAAGTTGTGAAATTACCCTTGTTACGGAACTTGAATTTGAGCACAAACAAAATTGAAGGGAAAATTCCCTCAGAGTTTGGTCTGTCACAGCCTCTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAACAGTTCTAGGAGAGTTGAAGCAACTGCAAAAGCTGAATCTTTCATGCAATAATCTTTCTGGCAACATTCCATCCAGTTTTGAAAATTCCATGTCAAGCTTGACTTATGTCAACATATCAAACAACCACTTAGAAGGGAGGCTGCCGAATAATCAAGCCTTTCTCAAGGCTCCAATTGAATCATTAAAAAACAACCAAGGCTTGTGTGGTAATCACACTGGCTTAGAGCTTTGCCCAACCAACCACAGTCAAAAGAGCCACAAGATCATCCTACTTATATTGTATATTATCTTAGGTGCTCTGGTACTAGTATTTTGTGGGGTGGGAATTTCGATGTATATTCTTTATCGGAGAGCAAGAAAGACTAAAACCAAAGATAAAGATTCTAATGAAGCACAAGCAGATGAAGTTTTTTCCATATGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCTACCAATAATTTTGATGATGACTTTCTCATTGGAGTGGGAGGAGAGGGATCTGTCTACAAGGCTAAGTTGTCTGCAGATATGGTTGTTGCAGTAAAGAAACTTCATTTGCGAACAGATGGGGAGAGGCCCGACTTCAAAGGCTTTGAAAATGAAATTCAGGCTTTGACAGAAATCAGGCATCGTAACATCATAAAGCTCTATGGATATTGTCAACATTCAAGATTCTCATTTTTGGTATATAAGTTCTTGGAAGGTGGAACTTTGACTCAAATGTTAAACAATGACACAAAAGCCACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTCGAGGTGTGGCTAATGCTTTGTCCTATATGCATCACGACTGCATACCTCCGATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTCATCATATGAAGCTCAACTTTCAGATTTCGGAACAGCCAAGTTTCTAAAGCCTGATTCAAGCAGCTGGACCACATTTGCAGGAACCTTTGGGTATGCAGCTCCAGAGTTTGCCCAAACAATGGAAGTGACTGAGAAGTGCGACGTTTACAGCTTTGGAGTTCTTTGTTTTGAAATCCTTCTGGGAAAGCATCCAGCAGATTTCATTTCTTCATTGTTCTCATCATGGACAGCAGCAATGACTTATAATTTGCTGTTGATTGATGTGTTAGACAACCGCCCTCCTCAACCTACCAATTCAATTGCTGGGGATGTCATCTTGATTACACGATTAGCATTTAGTTGCTTGAGTGAAAATCCATCTTCTCGACCCACCATGGATTATGTTTCAAAAGAGTTAATGATGAGAAAATCACAGTCACCTTTAGTGGACCAGTTCCCGCAGATCAGACTTGGACAACTCCACTAA 3288 0.3869 MFKHQNFTKNLVCWKILFAILWIILTVFFPQQVASFPKITSLTSTTVNDRAAIKDSEANALLKWKDSFENNSQGLFSNWTKATSPCKWEGIQCDKSKSITSINLANYGLIGKLQTFSFSSFPNLLGLNIYNNSFYGTIPPQIGNLSKINVLNFSNNPLEGSIPEEMWTLRSLKGLDFSVCLLSGQVSTSIANLTNLSYLDSMDNKFSSGYIPREIGKLNHLEYLSFAGCNRIGPVPREIGMLTKLGVMDLSHNTLSGTIPETIGNMSSLNKLYLSNNTLSGTIPVSMWNMSYLSVIYLSSNKLSGSIPSSLQNLVNLKELSLHSNNFFGPIPSSIGNLTKLRILYLFTNQFSGSIPASIGNMTNMLALSLYENDLSGTIPATIGNLTGLMALELATNKLHGSIPLSLYNFTDWGSFTLAENDFIGHLPAQVCSGGFLLYFSAFRNHFTGPVPTSLKNCSSIERIRLQGNQIEGDIARDFGVYPNLKHIDLSDNKFYGHISPNWGKCPNLNTFMISNNNISGGIPLTLLEANQLGELDLSSNHLTGELPKELGYLKSLLEVKISNNHLSGNIPSEIGLLENLVDFNVGGNMLSGTIPKEVVKLPLLRNLNLSTNKIEGKIPSEFGLSQPLESLDLSGNLLSGTIPTVLGELKQLQKLNLSCNNLSGNIPSSFENSMSSLTYVNISNNHLEGRLPNNQAFLKAPIESLKNNQGLCGNHTGLELCPTNHSQKSHKIILLILYIILGALVLVFCGVGISMYILYRRARKTKTKDKDSNEAQADEVFSIWSHDGKMMFENIIEATNNFDDDFLIGVGGEGSVYKAKLSADMVVAVKKLHLRTDGERPDFKGFENEIQALTEIRHRNIIKLYGYCQHSRFSFLVYKFLEGGTLTQMLNNDTKATAFDWEKRVNVVRGVANALSYMHHDCIPPIVHRDISSKNVLLDSSYEAQLSDFGTAKFLKPDSSSWTTFAGTFGYAAPEFAQTMEVTEKCDVYSFGVLCFEILLGKHPADFISSLFSSWTAAMTYNLLLIDVLDNRPPQPTNSIAGDVILITRLAFSCLSENPSSRPTMDYVSKELMMRKSQSPLVDQFPQIRLGQLH 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01741 1095 SUPERFAMILY L domain-like 83 428 - -
Vifa5g01741 1095 Pfam Protein kinase domain 808 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01741 1095 FunFam Nuclear pore complex protein NUP107 54 208 - -
Vifa5g01741 1095 Gene3D Ribonuclease Inhibitor 414 725 IPR032675 -
Vifa5g01741 1095 ProSitePatterns Tyrosine protein kinases specific active-site signature. 927 939 IPR008266 GO:0004672|GO:0006468
Vifa5g01741 1095 Gene3D Ribonuclease Inhibitor 308 413 IPR032675 -
Vifa5g01741 1095 Gene3D Ribonuclease Inhibitor 53 208 IPR032675 -
Vifa5g01741 1095 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 341 1075 - -
Vifa5g01741 1095 SMART LRR_typ_2 675 700 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 145 169 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 314 338 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 650 673 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 554 578 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 266 290 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 242 265 IPR003591 -
Vifa5g01741 1095 SMART LRR_typ_2 602 625 IPR003591 -
Vifa5g01741 1095 FunFam MDIS1-interacting receptor like kinase 2 882 1079 - -
Vifa5g01741 1095 Pfam Leucine rich repeat 629 688 IPR001611 GO:0005515
Vifa5g01741 1095 Pfam Leucine rich repeat 244 303 IPR001611 GO:0005515
Vifa5g01741 1095 Gene3D Transferase(Phosphotransferase) domain 1 882 1085 - -
Vifa5g01741 1095 SUPERFAMILY Protein kinase-like (PK-like) 787 1075 IPR011009 -
Vifa5g01741 1095 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 766 881 - -
Vifa5g01741 1095 FunFam Receptor-like protein kinase 7 209 411 - -
Vifa5g01741 1095 Gene3D Ribonuclease Inhibitor 209 307 IPR032675 -
Vifa5g01741 1095 Pfam Leucine rich repeat N-terminal domain 55 94 IPR013210 -
Vifa5g01741 1095 SUPERFAMILY RNI-like 368 694 - -
Vifa5g01741 1095 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 412 726 - -
Vifa5g01741 1095 ProSiteProfiles Protein kinase domain profile. 803 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01741 1095 Gene3D Phosphorylase Kinase; domain 1 762 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01741 Vifa-Chr5 508362728 508366132 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01741 57 975 Receptor kinase-like Gene Family AT4G08850 44.206 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g01741 Pkinase 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01741 - - gmx:100815688 1459.12