Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01737 ATGATAGCTTGTTGGAAGATTCTCTTCATGATCCTTTTAACAGTACTTTTTCCTCAACAAGTAGCTGGTTTTCCCAAAATCACGTCTTTGACCTCTACTACGGTTAATGATCAAGCTTCCATTGAAGACAGTGAAGCAAATGCTCTGTTAAAGTGGAAAGATAGCTTCGAAAACAACAGCCAAGGTCTCTTGTCAACTTGGACAAAAGCTACTAGTCCATGCAAATGGGAAGGAATTCAGTGTGACAAATCAAAATCCATCACTAGCATAAATCTTGCAAATTATGGACTCACAGGTAAACTCCAAACTTTTAGCTTCTCTTCATTCCCGAACCTTCTCGGGCTAAATATCTATAACAACTCCTTTTATGGGACCATTCCTCCACAAATTGGTAACCTGTCCAAAATAAATGTTTTGAAATTTTCTACAAACCTACTAGAAGGTTCCATCCCTAAAGAAATGTGGACAATGAGGAGTTTAAAAGTCCTTGATTTTATGGTATGTCAGCTAAGTGGGGAAATTCCTACATCCATAGCCAACTTGACTAACCTATCTTATCTAGATTTCATGGACAACAAATTTTCTAGTGGCTATATACCTCGTGAGATAGGAAAACTCAACCACTTGGAGTATCTATCTTTTGCAGGTTGTAACCGTATTGGTCCCATTCCCCGAGAAATTGGAATGTTGACAAAACTCGGTTTTATGGATTTGTCGCGTAACACTCTATCTGGTACCATTCCAGAAACAATTGGTAACATGAGCAGTTTAAATAAACTTTACCTTTCTAATAACACATTGTCTGGAACAATCCCAGTCTCCATGTGGAACATGTCTTACTTGTCCGTGCTCTTCCTTAGTAACAATAAACTCTTTGGATCAATCCCTTCTTCTCTACAAAACTTGGTCAATTTGAAGGAACTTTCATTTCGTTCCAACAACTTTTCTGGACCTATTCCTTCCTCAATCGGAAACTTGACAGAGCTAATGAGATTATACTTGTACAGTAATCATTTTTCAGGGCCAATTCCTGCTTCTGTCGGAAATATGATCAATATGTTGTTCCTCAATTTGCTTGATAACGATCTTTCAGGCACTATTCCTGCTACAATTGGAAATTTGACAGGGTTAATGGCCTTGGAATTGGCCACCAATAAATTGCATGGTAGCATTCCACAAAGCCTATATAACTTTACCAACTTGCGTGCCTTTTCATTGGAGGATAATGATTTCTTTGGCCCTTTGCCACCTCAAGTATGTTCTGGTGGATTTCTACTATACTTCACTGCTTTTCACAACCATTTCACCGGTCCAGTTCCAAAAAGCTTGAAAAACTGCTCTAGTATTGAAAGAATTAGGCTTGAGGGTAATCAACTAGAAGGTGATATAACCAAAGATTTTGGTGTATATCCAAATTTGAAATACATTGATCTGAGTGACAATAAACTTCATGGTCAGATTGCACCAAACTGGGGAAAGTGTCCTAATCTTAATACCTTCATGATATCCAACAATAATATCTCTGGTGGCATACCGTTAACACTTCTCGAGGCAAACCAACTAGGAAAACTCCACCTTTCTTCAAATCACTTGACGGGAAAGCTTCCAAAGGAACTTGGATACCTGAAATCATTACTTGAAGTTAAGCTCAGCAACAATCATCTTTCAGGAAATATTCCAAGTGAAATTGGATTGCTAGAGAATCTCGTAGATTTCAATGTAGGAGAAAACATGTTGAGTGGCACAATACCAAATGAAGTTGTGAAGTTACCCTTGTTACGGAACTTGAATTTGAGCACAAACAAAATTGAAGGGAGAATTCCGTCAGACTTTGACCTGTCACAGCCTCTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAACAGTTCTAGGAGAGTTGAAGCAACTGCAAAAGCTGAATCTGTCATGCAATAATCTTTCTGGCAACATTCCATCTAGTTTTGAAAATTCCATGTCAAGCTTGACTTATGTCAACATATCAAACAACCACTTAGAAGGGAGGCTACCAAATAATCAAGCCTTTCTCAAGGCTCCAATTGAATCATTAAAAAACAACCAAGGCTTGTGTGGTAATCACACTGGCTTAGAGCTTTGCCCAACCAACCACAGTCAAAAGAGCCACAAGATCATCCTACTTATATTGTTTATTATTTTTGGTGCTCTGATTGGGGTGGGAATTTCGATGTATATTCTTTTTCGGAGATCAAGAAAGACAAAAACCAAAGGCAAAGATTCTAAAGAAGCAAAAGCAGATGAAGTCTTTTCCATATGTAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCTACCAATAATTTCGACGACGATTTTCTCATTGGAGTGGGAGGAGAAGGATCTGTTTACAAGGCTAAGTTGTCTGCAGATATGGTTGTTGCAGTTAAGAAACTTCACCCGCGAACAAATGGGGAGAGGCCCAATTTCAAAGGCTTTGAAAATGAAATTCAAGCTTTGACAGAAATCAGGCATCGTAACATCATAAAGCTCTATGGATATTGTCAACATTCAAGATTCTCAATTTTGGTATATAAGTTCTTGGAAGGTGGAACTTTGACTCAAATGCTAAACAATGACACACGAGCCACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTCGCCAATGCTTTGTCCTATATGCATCACGACTGCATACCTCCGATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTTATCATACGAAGCTCAACTTTCAGATTTTGGAACAGCCAAGTTTCTAAAGGCTGATTCAAGCAGCTGGACCACATTTGCAGGAACCTTTGGGTATGCAGCTCCAGAGTTTGCCCAAACAATGGAAGTGACTGAGAAGTGCGACGTTTACAGCTTTGGAGTTCTTTGTTTTGAAATCCTTCTGGGAAAGCATCCAGCAGATTTCATTTCTTCATTGTTCTCATCATGGACAGCAGCAATGACTTATAATTTGCTGTTGATTGATGTGTTAGACAACCGCCTTCCTCAACCTACCAATTCAATTGCTGGGGATGTCATCTTGATTACACGATTAGCATTTAGTTGCTTGAGTGAAAATCCATCTTCTCGACCCACCATGGATTATGTTTCAAAAGAGTTAATGATGAGAAAATCACAGTCACCTATAGTGGACCAGTTCCCGCAGATCAGACTTGGACAACTCCACTAA 3240 0.388 MIACWKILFMILLTVLFPQQVAGFPKITSLTSTTVNDQASIEDSEANALLKWKDSFENNSQGLLSTWTKATSPCKWEGIQCDKSKSITSINLANYGLTGKLQTFSFSSFPNLLGLNIYNNSFYGTIPPQIGNLSKINVLKFSTNLLEGSIPKEMWTMRSLKVLDFMVCQLSGEIPTSIANLTNLSYLDFMDNKFSSGYIPREIGKLNHLEYLSFAGCNRIGPIPREIGMLTKLGFMDLSRNTLSGTIPETIGNMSSLNKLYLSNNTLSGTIPVSMWNMSYLSVLFLSNNKLFGSIPSSLQNLVNLKELSFRSNNFSGPIPSSIGNLTELMRLYLYSNHFSGPIPASVGNMINMLFLNLLDNDLSGTIPATIGNLTGLMALELATNKLHGSIPQSLYNFTNLRAFSLEDNDFFGPLPPQVCSGGFLLYFTAFHNHFTGPVPKSLKNCSSIERIRLEGNQLEGDITKDFGVYPNLKYIDLSDNKLHGQIAPNWGKCPNLNTFMISNNNISGGIPLTLLEANQLGKLHLSSNHLTGKLPKELGYLKSLLEVKLSNNHLSGNIPSEIGLLENLVDFNVGENMLSGTIPNEVVKLPLLRNLNLSTNKIEGRIPSDFDLSQPLESLDLSGNLLSGTIPTVLGELKQLQKLNLSCNNLSGNIPSSFENSMSSLTYVNISNNHLEGRLPNNQAFLKAPIESLKNNQGLCGNHTGLELCPTNHSQKSHKIILLILFIIFGALIGVGISMYILFRRSRKTKTKGKDSKEAKADEVFSICSHDGKMMFENIIEATNNFDDDFLIGVGGEGSVYKAKLSADMVVAVKKLHPRTNGERPNFKGFENEIQALTEIRHRNIIKLYGYCQHSRFSILVYKFLEGGTLTQMLNNDTRATAFDWEKRVNVVKGVANALSYMHHDCIPPIVHRDISSKNVLLDLSYEAQLSDFGTAKFLKADSSSWTTFAGTFGYAAPEFAQTMEVTEKCDVYSFGVLCFEILLGKHPADFISSLFSSWTAAMTYNLLLIDVLDNRLPQPTNSIAGDVILITRLAFSCLSENPSSRPTMDYVSKELMMRKSQSPIVDQFPQIRLGQLH 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01737 1079 SUPERFAMILY L domain-like 70 413 - -
Vifa5g01737 1079 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 750 865 - -
Vifa5g01737 1079 Gene3D Transferase(Phosphotransferase) domain 1 866 1070 - -
Vifa5g01737 1079 Pfam Leucine rich repeat 236 291 IPR001611 GO:0005515
Vifa5g01737 1079 Pfam Leucine rich repeat 617 676 IPR001611 GO:0005515
Vifa5g01737 1079 FunFam MDIS1-interacting receptor like kinase 2 isoform A 294 395 - -
Vifa5g01737 1079 SUPERFAMILY RNI-like 313 675 - -
Vifa5g01737 1079 FunFam MDIS1-interacting receptor like kinase 2 866 1063 - -
Vifa5g01737 1079 Gene3D Ribonuclease Inhibitor 209 379 IPR032675 -
Vifa5g01737 1079 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Vifa5g01737 1079 SUPERFAMILY Protein kinase-like (PK-like) 774 1059 IPR011009 -
Vifa5g01737 1079 SMART LRR_typ_2 590 613 IPR003591 -
Vifa5g01737 1079 SMART LRR_typ_2 663 688 IPR003591 -
Vifa5g01737 1079 SMART LRR_typ_2 542 566 IPR003591 -
Vifa5g01737 1079 SMART LRR_typ_2 302 326 IPR003591 -
Vifa5g01737 1079 SMART LRR_typ_2 638 661 IPR003591 -
Vifa5g01737 1079 SMART LRR_typ_2 254 278 IPR003591 -
Vifa5g01737 1079 PANTHER LEUCINE RICH REPEAT KINASE 2 322 1064 - -
Vifa5g01737 1079 ProSitePatterns Tyrosine protein kinases specific active-site signature. 911 923 IPR008266 GO:0004672|GO:0006468
Vifa5g01737 1079 Gene3D Ribonuclease Inhibitor 42 200 IPR032675 -
Vifa5g01737 1079 Gene3D Ribonuclease Inhibitor 486 583 IPR032675 -
Vifa5g01737 1079 Gene3D Ribonuclease Inhibitor 584 710 IPR032675 -
Vifa5g01737 1079 Gene3D Ribonuclease Inhibitor 380 485 IPR032675 -
Vifa5g01737 1079 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 398 714 - -
Vifa5g01737 1079 FunFam Piriformospora indica-insensitive protein 2 199 293 - -
Vifa5g01737 1079 Pfam Protein kinase domain 792 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01737 1079 Gene3D Phosphorylase Kinase; domain 1 747 865 - -
Vifa5g01737 1079 FunFam Nuclear pore complex protein NUP107 42 198 - -
Vifa5g01737 1079 ProSiteProfiles Protein kinase domain profile. 787 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01737 Vifa-Chr5 506982491 506985847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01737 18 959 Receptor kinase-like Gene Family AT4G08850 43.469 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g01737 Pkinase 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01737 - - gmx:100815688 1431.77