Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01732 ATGATTCTGTTCATTATTCTCTTTGTTCTTTCATCTCTTTCATTGCCACAATCTATAGCTGAAGCCACTGAAACTGAAGCACAAGCTTTATTAAAATGGAAACATACTTTTGATAACCAAACCCAAACTCTCTTATCAAGTTGGATAAATACCACAAATCCATGCACATGGAGAGGAATCCAATGTCAGAAATCCAATTCCATTTCAACCATAAACCTTGAAAATTTTGGACTAAAAGGTACACTTCACTCTCTCACTTTTTCATCACTCCCAAATCTCACAACTCTTAACATCTATAGTAACCACTTTTATGGAACCATTCCCCCACAAATTGGTAACATGTCCAAAATAATCACATTGAATTTTTCTCAAAACCCTATTGATGGTTCCATTCCTCAAGAATTATTCACTTTGAAAAGTTTACAAAACATTGATTTCTCATTTTGTAAACTAAGTGGAGCAATTTCTAGTTCTTTAGGAAATTTAACCAATTTGTTGTACCTAGATTTAGGACACAATGATTTTTCTGGTGGATCTATTCCTCCTGAGATTGGAAAATTGAAAAGGTTGTGGTTTCTATCAATTCCAGAAAGTAAACTAATTGGTTCAATTCCACAAGAAATAGGGTTTTTGACAAACCTTACTTATATTGATTTGTCATTCAACTCTATATCTGGTGTCATCCCTGAAACCATTGGTAATCTGAGTAAATTGAATTTCCTTATACTTTCTAATAACACCAAGTTGTCTGGTCCAATTCCACACTCCTTGTGGAACTTGTCTAGTTTGAATGTGATTTACTTTGATAAAATGAATCTTTCTGGTTCAATCTCTGATTCTATACAAAACTTGGTTAATTTGGTTGATCTTGCACTTGATCTCAATCGCCTTTCGGGATCCATTCCTTCCACGATTGGGAAGTTGAAAAATCTTGTTACTTTGTATTTGTCGACTAATCGTCTTTCTGGATCGATTCCTGAGTCTATAGGAAATTTGATCAATTTGGAAATTCTTAGTCTCCAAGAAAACAATCTGTCTGGAACAATTCCAGATTCAATTGGAAATTTGAAGTGGCTCACTACTTTTGAAGTAGCTACCAATAAACTTCATGGTAGAATTCCAAATGGACTTTATAATATTACCGATTGGTATTCGTTTGTTGTGTCTCAGAATGATTTTGTTGGTCATTTGCCATCTCAAATATGCTCTGGTGGAAGATTAAGGTACTTAAATGCGGATTCCAACCGTTTCACTGGTCCTGTGCCAACAAGTTTGAAAAACTGTTTTAGTATTGAAAGAATCACGCTCCAAGTGAACCAAATAGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAAATTGCGGTATCTTGATTTGAGTGACAATAAATTTCACGGACACATTTCAACAAACTGGGAAAAGAGTCTTGATCTTGATACTTTCCAGGTATCTAACAATAATATTTCTGGTGTTATACCATTAGAACTTATTGGTTTACCCAATCTGGGTAGGCTTCATCTTTCTTCAAATCAACTGACTGGGAAACTTCCAAAGGAATTAGGAGACATGAAATCATTAGTTGAACTAAAGCTTAGTAACAATTATTTCGAAGATAACATTCCAACAGAAATTGGATTGCTGCCGAGACTCCAAGATTTGGATCTCGGAGGAAACGAGTTGAGTGGCACGATACCGGAAGAAGTTGCGAGGTTGTCCGGGTTACGGAAGTTGAATTTGAGCAGAAACAAACTTGAAGGAAGTATTCCATCTCAGTTTGGCTCATCTCTTGGGTCGCTTGACCTTAGTGGCAATTTTTTGAGTGGAAAAATACCAACAGCTCTTGGAGGTTTGGTGCAGTTGTCAATGTTGAATCTCTCACATAATATGCTCTCAGGGACCATTCCTCAAAATTTTGAAAGGAATTTGGTTTTTGTTAACATATCAGACAACCAGTTAGAAGGCCCACTTCCGAAAACTCTGGCTTTTCTTAGTGCTTCATTTGAATCATTCAAAAATAACAAAGACTTATGTGGAAATATCACAGGATTGGATCCTTGTCCAACAAGCAGTAGTCGAAAGAGCAAACATGTCCTTCGGTCAGTATTGATTGCTCTAGGAGCTCTAATATTAGTGGTGTGCAGTATCGGAATTTCAATGTATATTTTGTGTCAAAGAAAACCAGCAAAGGATGAAAGCCAAACGGAAGAAGAAGCACAAAGGGGAGTACTATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCTACTGAGAATTTCGATGACAAACATCTCATTGGAGTTGGGAGTCAAGGAAATGTTTACAAAGCAGAGTTGTCTTCAGATTTGGTTGTTGCTGTGAAGAAGCTTCATTCAGTAACGGATGAAACAAAGTCATATTTCAGTTCAAAGTCTTTTACGAGTGAGATTGAAACCTTGACAGGAATCAAACACAGGAACATCATAAAGCTTCATGGATTTTGCTCACATTCTAAGTTCTCATTTTTGGTTTACAAGTTCATGGAAGGCGGAAGCTTAGATCAAATACTAAACAATGACTCACAAGCCACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTCGCCAATGCTTTGTCCTACTTGCATCATGATTGTTTGCCTCCAATTATTCATCGGGACATATCAAGCAAGAATGTTCTTCTTAATCTTGACTATGAAGCTCATGTCTCCGACTTCGGGACGGCTAAGTTTCTAAAGCCTGGTTTACCTAGTTATACCCATTTTGCAGGCACTTTTGGGTATGCAGCTCCAGAATTGGCACAAACAACGGAAGTGAATGAAAAATGTGATGTATACAGTTTTGGAGTACTTGCATTGGAAATCATAATGGGAAAACATCCAGGAGATCTCATTTCATTATTTTTGTCACCAACTACAAGATCAATGGCTAATGATATGTTGCTGATAGATGTTTTAGATCAACGACCTCAACAAGTTATGAAACCAATTGATGAAGAGGTGATCTTGATTGCAAGGTTGGCATTGGCTTGCTTGAGTCAAAAACCAAGTTCTAGACCAACCATGGATCAAGTATCTAAGATGCTTGCAATGGGAAAAACACCTTTGGGGAACCAACTTCGCATTATCAGACTAGGACAACTTCAATAA 3177 0.3673 MILFIILFVLSSLSLPQSIAEATETEAQALLKWKHTFDNQTQTLLSSWINTTNPCTWRGIQCQKSNSISTINLENFGLKGTLHSLTFSSLPNLTTLNIYSNHFYGTIPPQIGNMSKIITLNFSQNPIDGSIPQELFTLKSLQNIDFSFCKLSGAISSSLGNLTNLLYLDLGHNDFSGGSIPPEIGKLKRLWFLSIPESKLIGSIPQEIGFLTNLTYIDLSFNSISGVIPETIGNLSKLNFLILSNNTKLSGPIPHSLWNLSSLNVIYFDKMNLSGSISDSIQNLVNLVDLALDLNRLSGSIPSTIGKLKNLVTLYLSTNRLSGSIPESIGNLINLEILSLQENNLSGTIPDSIGNLKWLTTFEVATNKLHGRIPNGLYNITDWYSFVVSQNDFVGHLPSQICSGGRLRYLNADSNRFTGPVPTSLKNCFSIERITLQVNQIEGDISQDFGVYPKLRYLDLSDNKFHGHISTNWEKSLDLDTFQVSNNNISGVIPLELIGLPNLGRLHLSSNQLTGKLPKELGDMKSLVELKLSNNYFEDNIPTEIGLLPRLQDLDLGGNELSGTIPEEVARLSGLRKLNLSRNKLEGSIPSQFGSSLGSLDLSGNFLSGKIPTALGGLVQLSMLNLSHNMLSGTIPQNFERNLVFVNISDNQLEGPLPKTLAFLSASFESFKNNKDLCGNITGLDPCPTSSSRKSKHVLRSVLIALGALILVVCSIGISMYILCQRKPAKDESQTEEEAQRGVLFSIWSHDGKMMFENIIEATENFDDKHLIGVGSQGNVYKAELSSDLVVAVKKLHSVTDETKSYFSSKSFTSEIETLTGIKHRNIIKLHGFCSHSKFSFLVYKFMEGGSLDQILNNDSQATAFDWEKRVNVVKGVANALSYLHHDCLPPIIHRDISSKNVLLNLDYEAHVSDFGTAKFLKPGLPSYTHFAGTFGYAAPELAQTTEVNEKCDVYSFGVLALEIIMGKHPGDLISLFLSPTTRSMANDMLLIDVLDQRPQQVMKPIDEEVILIARLALACLSQKPSSRPTMDQVSKMLAMGKTPLGNQLRIIRLGQLQ 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01732 1058 SMART LRR_typ_2 618 642 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 548 571 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 162 187 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 211 234 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 308 331 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 500 524 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 572 596 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 332 356 IPR003591 -
Vifa5g01732 1058 SMART LRR_typ_2 90 114 IPR003591 -
Vifa5g01732 1058 FunFam Leucine-rich repeat receptor protein kinase MSP1 729 846 - -
Vifa5g01732 1058 SMART LRR_sd22_2 548 571 - -
Vifa5g01732 1058 SMART LRR_sd22_2 211 237 - -
Vifa5g01732 1058 SMART LRR_sd22_2 618 641 - -
Vifa5g01732 1058 SMART LRR_sd22_2 308 334 - -
Vifa5g01732 1058 SMART LRR_sd22_2 138 164 - -
Vifa5g01732 1058 Gene3D Ribonuclease Inhibitor 22 177 IPR032675 -
Vifa5g01732 1058 ProSitePatterns Tyrosine protein kinases specific active-site signature. 892 904 IPR008266 GO:0004672|GO:0006468
Vifa5g01732 1058 Gene3D Phosphorylase Kinase; domain 1 727 846 - -
Vifa5g01732 1058 SUPERFAMILY Protein kinase-like (PK-like) 749 1038 IPR011009 -
Vifa5g01732 1058 Gene3D Ribonuclease Inhibitor 178 270 IPR032675 -
Vifa5g01732 1058 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 381 691 - -
Vifa5g01732 1058 ProSiteProfiles Protein kinase domain profile. 766 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01732 1058 FunFam Nuclear pore complex protein NUP107 23 180 - -
Vifa5g01732 1058 Pfam Protein kinase domain 767 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01732 1058 SUPERFAMILY RNI-like 348 678 - -
Vifa5g01732 1058 Pfam Leucine rich repeat 479 536 IPR001611 GO:0005515
Vifa5g01732 1058 Pfam Leucine rich repeat 575 631 IPR001611 GO:0005515
Vifa5g01732 1058 Pfam Leucine rich repeat 212 267 IPR001611 GO:0005515
Vifa5g01732 1058 Gene3D Transferase(Phosphotransferase) domain 1 847 1046 - -
Vifa5g01732 1058 SUPERFAMILY RNI-like 71 379 - -
Vifa5g01732 1058 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Vifa5g01732 1058 FunFam MDIS1-interacting receptor like kinase 2 847 1044 - -
Vifa5g01732 1058 Gene3D Ribonuclease Inhibitor 384 690 IPR032675 -
Vifa5g01732 1058 Gene3D Ribonuclease Inhibitor 271 383 IPR032675 -
Vifa5g01732 1058 FunFam Receptor-like protein kinase 7 181 380 - -
Vifa5g01732 1058 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 432 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01732 Vifa-Chr5 505889782 505893050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01732 2 940 Receptor kinase-like Gene Family AT4G08850 44.247 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g01732 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01732 - - gmx:100815688 1271.14