Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01728 ATGGGTCGCTCCATTTCATCTTTTCATCACCTTCTTTTCTCATCTCTTGTTGTTTTCACTTTGTTGTTGAATCATGTTCATGCAAACAAAAAGTGTTACATTGTATACTTGGGGGCACATTCACATGGTTCAACTCCTTCCACTGCTGACCTTGAAATTGCTACAACTTCTCATTATGATTTACTAGCTTCAATCTTGGGAAGTGAGGAGAATGCAAAAGAAGCAATTATTTATTCATATAATAAGCAGATAAATGGGTTTGCAGCTATACTTGAAGAGGAAGAAGCTGCACAAATTGCAAAAAATGAAAACGTGGTATCAGTGTTCTTGAGTAAAGAGCATAAACTGCACACTACACGGTCATGGGAATTTCTTGGATTGCGAGGAAATGATATGAACTCAGCTTGGCAAAAAGGAAGGTTTGGTGAAAATGCCATCATAGCTAACATTGATTCAGGTGTTTGGCCTGAATCAATGAGTTTTAGTGATAGAGGAATAGGCCCAATTCCAGCAAAATGGCGTGGTGGTAACATATGTCAAATTAACAAACTCAATGGTTCTACCAAAGTTCCATGTAACAGGAAGCTAATTGGAGCAAGATATTTCAACAACGCATACGAATCAGTCAGGGGAAAACTCCCTCGTTCGCAACAAACAGCGCGTGACTTTGTAGGCCACGGTACACACACATTATCAACAGCAGATGCTACTAGTTGTTTTGGTGCCGATGTATTAGCTGCTATTGATCAAGCAATTAATGATGGTGTTGATTTGATTTCGGTTTCTGCTGGTGAGAGTACTAGTACAAATTCTGAAGAAATTTTCACTGATGTGGTTTCAATAGGTGCATTTCATGCACTTGCTAGAAATATATTATTAGTTGCTTCTGGCGGGAATGACGGACCTACGCCTGGAAGTGTTGTTAATGTTGCTCCTTGGGTGTTCACTGTTGCTGCTAGTACATTAGATAGAGATTTCAGCAGTTCTATTACCATTGGTAACAAAACAATCACGGGAGCCAGTCTTTTTGTAGACTTGCCACCTAACAAGTCTTTCACCGTAGTAACTTCTACTGATGCGAAATTGCCAAATGCGACGGATCGAGATGCGCAATTTTGTAAAGCAGGAACACTTGATCCTTCAAAAGTGAAGGGTAAAATAGTGGCATGTGTTAGAGAAGGGAAAATAAATTCAGTTGCTGAGGGTCAAGAAGCTTTATCTGCGGGCGCAGCTGGAGTCATTTTGAGAAATCAACCGCTAGTTAATGGAAGAACACTTCTTTCTGAGCCTCATGTTTTGTCTACTGTCAGCTATTATTCCAAACATCAAATAACAAGACAACATAGTGAAGACCTAATTCCGTCGGATATAAAATCAGGTACTAAAATAAGATTGTCAAAAGCAAAAACAAAATATGGAACAAAGCCAGCTCCAGTTATGGCTTCTTACTCATCTAGAGGACCAAATAAAGTTCAACCATCAATACTCAAGCCTGATGTAACTGCACCGGGTGTGAACATACTTGCTGCCTATTCATTGTTTGCAAGTGCTTCTAATTTAATAACAGACACTCGTCGAGGTTTTCCATTCAATGTGATGCAAGGAACATCTATGTCTTGTCCTCATGTTGCTGGCACTGCTGGATTAATCAAAACACTTCATCCTAATTGGTCTCCAGCAGCTATTAAATCAGCTATCATGACCACCGCAAGCACAAGAGATAACACCAACAAGCCAATCCGTGACGCATTTGATAAAACATTGGCAAATCCATTTGCTTATGGTTCAGGACACATTCAACCCAACAGTGCAATAGATCCAGGACTTGTTTATGATCTAAGCATTATTGATTACTTAAACTTCTTATGTGCTTCTGGATACAACCAACAACTCATTTCATCACTTAATTTCAACATGACATTTACTTGTTCAGGATCACATAGCATAACAGACTTGAATTACCCTTCAATCACATTACCAAATCTTGGATTAAATGTTGTTAACATCACACGGACAGTCACCAATGTTGGACCTCCAAGTATATATTTTGCAAAAGCTCAGTTGTCCGGATATAAAGTTTTTGTAGAACCGAATTTCTTGAAATTCAAGAGAATCGGTGAAAAGAAGACATTTAGAATTTCTGTGCAAGCAACAAAGGTGACTCCACGGAGAAAATATCAATTTGGTGAATTGAAATGGACAAATGGAAGACACATTGTAAGGAGTCCTATTACTGTTCGACGTAAATGA 2250 0.3884 MGRSISSFHHLLFSSLVVFTLLLNHVHANKKCYIVYLGAHSHGSTPSTADLEIATTSHYDLLASILGSEENAKEAIIYSYNKQINGFAAILEEEEAAQIAKNENVVSVFLSKEHKLHTTRSWEFLGLRGNDMNSAWQKGRFGENAIIANIDSGVWPESMSFSDRGIGPIPAKWRGGNICQINKLNGSTKVPCNRKLIGARYFNNAYESVRGKLPRSQQTARDFVGHGTHTLSTADATSCFGADVLAAIDQAINDGVDLISVSAGESTSTNSEEIFTDVVSIGAFHALARNILLVASGGNDGPTPGSVVNVAPWVFTVAASTLDRDFSSSITIGNKTITGASLFVDLPPNKSFTVVTSTDAKLPNATDRDAQFCKAGTLDPSKVKGKIVACVREGKINSVAEGQEALSAGAAGVILRNQPLVNGRTLLSEPHVLSTVSYYSKHQITRQHSEDLIPSDIKSGTKIRLSKAKTKYGTKPAPVMASYSSRGPNKVQPSILKPDVTAPGVNILAAYSLFASASNLITDTRRGFPFNVMQGTSMSCPHVAGTAGLIKTLHPNWSPAAIKSAIMTTASTRDNTNKPIRDAFDKTLANPFAYGSGHIQPNSAIDPGLVYDLSIIDYLNFLCASGYNQQLISSLNFNMTFTCSGSHSITDLNYPSITLPNLGLNVVNITRTVTNVGPPSIYFAKAQLSGYKVFVEPNFLKFKRIGEKKTFRISVQATKVTPRRKYQFGELKWTNGRHIVRSPITVRRK 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01728 749 Gene3D - 622 748 - -
Vifa5g01728 749 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 117 IPR037045 -
Vifa5g01728 749 Pfam Fibronectin type-III domain 651 746 IPR041469 -
Vifa5g01728 749 Gene3D - 323 473 - -
Vifa5g01728 749 ProSiteProfiles Serine proteases, subtilase domain profile. 121 605 - -
Vifa5g01728 749 Pfam Subtilase family 237 577 IPR000209 GO:0006508|GO:0008236
Vifa5g01728 749 Pfam Peptidase inhibitor I9 33 117 IPR010259 -
Vifa5g01728 749 FunFam Subtilisin-like protease SBT5.3 22 117 - -
Vifa5g01728 749 ProSitePatterns Serine proteases, subtilase family, serine active site. 535 545 IPR023828 -
Vifa5g01728 749 Pfam PA domain 369 420 IPR003137 -
Vifa5g01728 749 CDD PA_subtilisin_like 329 446 - -
Vifa5g01728 749 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 239 746 IPR045051 -
Vifa5g01728 749 Gene3D Peptidase S8/S53 domain 145 234 IPR036852 GO:0004252|GO:0006508
Vifa5g01728 749 Gene3D Peptidase S8/S53 domain 237 618 IPR036852 GO:0004252|GO:0006508
Vifa5g01728 749 CDD Peptidases_S8_3 114 571 IPR034197 -
Vifa5g01728 749 PRINTS Subtilisin serine protease family (S8) signature 222 235 IPR015500 -
Vifa5g01728 749 PRINTS Subtilisin serine protease family (S8) signature 534 550 IPR015500 -
Vifa5g01728 749 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Vifa5g01728 749 SUPERFAMILY Subtilisin-like 116 609 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01728 Vifa-Chr5 505279517 505284049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01728 25 747 Subtilisin-like Serine Gene Family AT2G04160 47.280 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01728 - - gmx:100803751 1146.34