Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01724 ATGTCCTTTCTCCATTCTTCTCTTCACCAATTCCAAACTCCTTCTTCTTACTCTCAATCTCACTCATCAAACCCTCTCACCTTTAACCATAACCCTAACAGAAACGGTTACATCAAGTTCCCAACAACTCACCGTGAAAATCTCCGTTACCTAAAATCCCTAACCATAATCCATCCTAACAACCTCCCTCCCCCCGACGCCGTCCGCCACATCCTCACCACCGTCACTTTCCTCAAATCACATTCCTTCTCCGACGCCGACATCTCCCATCTCAACCACCACTCTCCCAAACTCTTCTCCACCACCTTCAACCCCACGGACCTCTCCCCCGTCTTCAATTTCCTCTCTAACGACCTCCTCGCCACCAATGAAGAATCCCGCGGCCTCATCCTCCGCTGTCCCAACCTCCTCTTCACCGACCCCAACCACATCCTCAAACCAACTCTCAACTTCCTACACGAAATCGGAATCCGCGGGTTAAACAAACCAACGAACCGGAACGCGCATCTGTTGAACACGCGCGTGGAGAAGCTGCGGCTGAGGGTGAGATTCATGGAGGAGGTGGTGGGGTTTTCTTACGACGAAGCGGTTAATGCAGTTGTGAGGCTGCCGGCGATATTGGGATACGATGTGGAGAATAATTTGTGGCCCAAGTTTGTGTATTTGGTGAAAGAGATGGAGAGGGATTTGGAGGAGTTGAAGAAGTTTCCTCAGTTTTTTGGGTTTAGTTTAGAGAAGAGGATTGTGCCAAGGCATTTGCATTTGAAGGAAAGAGGTGTTAGGATTCCTTTGAATAGAATGCTCATGTGGGGGGATCAGAAATTCTATGCCAAGTGGAAGTGA 843 0.4911 MSFLHSSLHQFQTPSSYSQSHSSNPLTFNHNPNRNGYIKFPTTHRENLRYLKSLTIIHPNNLPPPDAVRHILTTVTFLKSHSFSDADISHLNHHSPKLFSTTFNPTDLSPVFNFLSNDLLATNEESRGLILRCPNLLFTDPNHILKPTLNFLHEIGIRGLNKPTNRNAHLLNTRVEKLRLRVRFMEEVVGFSYDEAVNAVVRLPAILGYDVENNLWPKFVYLVKEMERDLEELKKFPQFFGFSLEKRIVPRHLHLKERGVRIPLNRMLMWGDQKFYAKWK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01724 280 PANTHER CGI-12 PROTEIN-RELATED 50 278 IPR003690 GO:0003690|GO:0006355
Vifa5g01724 280 Pfam mTERF 122 275 IPR003690 GO:0003690|GO:0006355
Vifa5g01724 280 MobiDBLite consensus disorder prediction 13 35 - -
Vifa5g01724 280 Gene3D Transcription termination factor 3, mitochondrial 43 280 IPR038538 -
Vifa5g01724 280 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Vifa5g01724 280 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Vifa5g01724 280 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Vifa5g01724 280 SMART mt_12 197 229 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01724 Vifa-Chr5 504269695 504270537 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa5g01724 mTERF 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01724 K15032 - gmx:100812333 361.303