Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01718 ATGCCTCCGAAAGTGGTAAAACGAGGTGCTGCGGCGAAGAAAGCGAGTCTTTCTTCAAAAACTGCAATCCAGAATCAGAAGCAAGAACCTGAACCTGAACCTGTGAATGTGAAGAATAACAAAGAAAATCATGTTGCTGATGTTGCGGGGGAAGAGAATCCCGTTGAGACAGTGCCCAATGGTTTGGTTGCGGTGGAAAACAATGGGGAGGAGGTTAAGGACTCCATAGATGAATATGAGAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGACGAGTATGTCGGTGATGACTATGATGAGAGGGAAAATGAACTAGAGGATGGTCAGGAGGTTGTAGATGAAGTGGTGGAAGAAGTGGAAGAGATTGTTGATGAAGAAGATGGTGATACTGGCGATGAAGAAATTGAGTATGTTTACGAAGAAGTTGAGGGTGATGATGATGATGATGCTGATGCTGCTGGTGATGCTGATGCTGCTGGTGATGATGATGATGATGATCATGCCGGTACGGAGAACGAGCATGAGCATCTGGCTGATGTGGCTGAAGAGGAGCAAGGTGAAGTTAGAAAGGAAAGGAAGAACCGAAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACAGAGGATGATCTGAGGAAGATTTTCGGTAAAGTTGGGAAGATTACTAAAGCCAGGCTAATGAAGAATCCTCGGACTAAAAGGAACAAGGGGTTTGCATTATTGCGTTTTGAAACTGTTGAACAAGTGAAAAGAGCACTGGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGCGGTATCACTCCATGTCAGGACAGTGATACTCTCTATTTAGATAACATTTGCCAGACTTGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGAAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACAATGAGGGAACAAACTGTGGATTTGCGCTTTTGGAATTTTCATCACGTTCAGATGCTAAGGAAGCCTATAAGCGATTGCAGAAGACAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCAGACTCCTTTGATGACCTGGAAGATGATATTATGGCACAGGCTAAAACTGTATTTATTGATTTACTACCTCCTTCATGGGATGAAGATTATATCCGAGGTCTTCTTAAAAAATACGGGGAGGTTGAAAAAGTTGAACTTGCTAAGAACAGGCCAGCTGCTCGCAGGAAGAATTATGGATTTGTTACATTTGCTACGCATGCTGCTGCTGTGGAATGTGCAGAGAGCATTACCAGTGCAGGGTTAGGCGACGGCAACAAAAAGGCAAAAGTTAGGGCTAGGTTGTCGAGACCTTTTCAGAAAGTTCGTGGAAAACATGTTACTCGTAGTGACTTCTCTGGCCGCAAGCTTGGAAGGTCTGCAAGGCCTTCACGGAGTCGACCTTCACAGCGGAGTCGTCTTGCACTTCGGAATCGACTTGGACCACCAATTCGACCTACACTACAGAGTCGACTTGGACCACCAAGTCGATCTGCTCGTGTGGCGAAAAGACTTGGAAATAGTATTCCACCAGTTAGACCTTCTAGTGCGAGAAGTAGACGCCCTGTCACAACAGTGCCAGTAAGAGCTAGGCCAACCACTTCTCCAGCTAGATCCTATGAGAGGAGATTGACAGCTGCTTATCCAAAAGGTAGCATGAAGAGAGATTATGGTCGACCTGTGGATCTGCCACCTCCAAGAAGTAGAGCTTCTGCAGATTATGGCTCTCAGGTGGCCTCTCAAAGACGTTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAGCGTGTCTCGTACTGCACCAAGGAGGGGTCATCTAGATGACAGCTTTGATCAAAGACTTGAAAGGCCTCCTCCGGATCTAAGTTATCGTGAAGGGCGTCCTCGTGATTATGACACATTATCTGGCTCGAAACGTCCATATGCTACCATTGATGATATTCCTCCACGGTATGCTGATGCTGATGCTCGCCAATCAAGATCTCGATTAAACTATGATTACGGAGGCAGTGTTTCAGAATATAGAGAGACTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAGTAGTGGCAGTAGAAGTTCTATATCTATTCAAAACTCACATGAGGCATATAGCAGTCGACATGACATGAGTTATGGAAGAGGTCCGATTGGTGGTAGTGATGGGGGTATATACTCATCAAGTTATGGTGGAGATTACAGATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCATCCATGTATTCTAGCAGCAGGGGTATGAACGGTAGTAGCAGTTTTATGGGTAGTGGCAGCGGATCTAGGTCTTATTATTGA 2421 0.4432 MPPKVVKRGAAAKKASLSSKTAIQNQKQEPEPEPVNVKNNKENHVADVAGEENPVETVPNGLVAVENNGEEVKDSIDEYEKDEHLDLEDNYHESDPDEYVGDDYDERENELEDGQEVVDEVVEEVEEIVDEEDGDTGDEEIEYVYEEVEGDDDDDADAAGDADAAGDDDDDDHAGTENEHEHLADVAEEEQGEVRKERKNRKEFEVFVGGLDKNATEDDLRKIFGKVGKITKARLMKNPRTKRNKGFALLRFETVEQVKRALAELKNPVINGKQCGITPCQDSDTLYLDNICQTWKKEALKEKLKHYEVESFKDLTLVEDGNNEGTNCGFALLEFSSRSDAKEAYKRLQKTDVVFGVDKPAEVSFADSFDDLEDDIMAQAKTVFIDLLPPSWDEDYIRGLLKKYGEVEKVELAKNRPAARRKNYGFVTFATHAAAVECAESITSAGLGDGNKKAKVRARLSRPFQKVRGKHVTRSDFSGRKLGRSARPSRSRPSQRSRLALRNRLGPPIRPTLQSRLGPPSRSARVAKRLGNSIPPVRPSSARSRRPVTTVPVRARPTTSPARSYERRLTAAYPKGSMKRDYGRPVDLPPPRSRASADYGSQVASQRRSSYRDYPARDSGYSDLHRSVSRTAPRRGHLDDSFDQRLERPPPDLSYREGRPRDYDTLSGSKRPYATIDDIPPRYADADARQSRSRLNYDYGGSVSEYRETYGDRLGRSSLGYSSGSRSSISIQNSHEAYSSRHDMSYGRGPIGGSDGGIYSSSYGGDYRSRGSDAGGSSYSSMYSSSRGMNGSSSFMGSGSGSRSYY 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01718 806 Gene3D - 284 367 IPR012677 -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 175 197 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 92 115 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 721 806 - -
Vifa5g01718 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Vifa5g01718 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 441 IPR000504 GO:0003723
Vifa5g01718 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 352 IPR000504 GO:0003723
Vifa5g01718 806 MobiDBLite consensus disorder prediction 447 690 - -
Vifa5g01718 806 Gene3D - 153 278 IPR012677 -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 127 174 - -
Vifa5g01718 806 SUPERFAMILY RNA-binding domain, RBD 204 351 IPR035979 GO:0003676
Vifa5g01718 806 CDD RRM_SF 383 457 - -
Vifa5g01718 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Vifa5g01718 806 MobiDBLite consensus disorder prediction 773 806 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 127 197 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 34 49 - -
Vifa5g01718 806 FunFam Heterogeneous nuclear ribonucleoprotein Q 284 367 - -
Vifa5g01718 806 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 776 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 611 666 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 721 740 - -
Vifa5g01718 806 Coils Coil 104 131 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 17 33 - -
Vifa5g01718 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 368 IPR000504 GO:0003723
Vifa5g01718 806 MobiDBLite consensus disorder prediction 70 91 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 537 557 - -
Vifa5g01718 806 SMART rrm1_1 382 457 IPR000504 GO:0003723
Vifa5g01718 806 SMART rrm1_1 285 364 IPR000504 GO:0003723
Vifa5g01718 806 SMART rrm1_1 205 278 IPR000504 GO:0003723
Vifa5g01718 806 MobiDBLite consensus disorder prediction 1 115 - -
Vifa5g01718 806 MobiDBLite consensus disorder prediction 469 483 - -
Vifa5g01718 806 CDD RRM_SF 206 275 - -
Vifa5g01718 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 463 IPR000504 GO:0003723
Vifa5g01718 806 Coils Coil 62 82 - -
Vifa5g01718 806 Gene3D - 370 500 IPR012677 -
Vifa5g01718 806 SUPERFAMILY RNA-binding domain, RBD 377 458 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01718 Vifa-Chr5 502806477 502811784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01718 206 468 Eukaryotic Initiation Factors Gene Family AT4G34110 21.429 7.62e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01718 - - gmx:100811387 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00099 4 11981768 11986028 Vifa5g01718 5 502806477 502811784 PCT