Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01716 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAATAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACGTGGCATTGGCAACAGCAGCAAAAGCAAAATTACTTCTTCGTGAGCTAAAAACCGTTAAAGCGGATTTAGCATTTGCTAAAGCGCGCTGTGCTCAACTTGAAGAAGAAAATAAATTACTCAGGGAACGAGAAGGAAGCGATAAGGGACTTATCCGTGATGATGATGATCTGGTATTAATCAATTATGATGCTAAACCCAGCTTTACACAGATCTTGGTAATCTCATCTATTGGGTTGATATTTTTCATAGCATTGCGTTATCATCTCAAAAAGATTCGAGATCAAAAGATCATTCCGCGTTTAAGATTATCGCGTGCAGGTCACCCCCCAAAGCTTGAAAGATTCTCTCATTACGTAGCTAGGCAAATGGGGTTCAAGGATAGGAGAATCGGTCCTGATATATGTAGATTGGCTTCTGAATACATAAGCAAATATGAAGGGTTTGAAGATGATATATATGCCTATTTTGAGAATGAACCAGATGCTGATTCACTTTATGTCAAGTTGGTGGAAGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTTCATTGGAACCATTGTGACATATTGATAAGTCAGGTTTTGAGCTCGGACATTTCTGAGCCAAAAAAGAAGCTAAAGAACATAGTTATGGCTGCTACTAGGGATCAAAGGTTCGAGAGAGTTGCCAAGAGTCTGAAGGTGGCTAGTGTTTTTAATACATTAGTGGAAGAGATTAAAGCGATGGGTATTGCAGTAAACGATGACTCTCAATGTACAGAGGTAATGGCTCCTGTGGCTCACAGTGATAGGAGCCCGGTCCTTCTTCTAATGGGGGGAGGTATGGGAGCTGGCAAGAGCACTGTACTCAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCATCAGGAAATGCCGTAGTCATTGAAGCAGATGCCTTCAAAGAATCAGATGTCATCTACAGGGCACTTCGCTCAACAGGTCATCATGACATGATTCGAACAGCCGAATTGGCGGAAAGAAAAAACACAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGAAGAATGCTTTTGAAAGATTTAAAGATGTTGATGAATCAAGTTCATTCAAGGAAGCCCGTGCTCTAGCTGAAGCTTCTCAAAATGGAGCTCCTTTTAACCAAGGTTTTGGCAATTCGCCCGGTTCTCTATCTGCACGTAAGATTGAAGAAGCTGAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTATGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATCTGCCTTGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTGCTTATGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGCGATGTATACTTCGAATGGCCTTCGGAGAGAACAAATGGATATATCCTTCCATGTATAGCCGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 2469 0.4075 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVAIISGNNISEKAYEDGRTMVENKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDVALATAAKAKLLLRELKTVKADLAFAKARCAQLEEENKLLREREGSDKGLIRDDDDLVLINYDAKPSFTQILVISSIGLIFFIALRYHLKKIRDQKIIPRLRLSRAGHPPKLERFSHYVARQMGFKDRRIGPDICRLASEYISKYEGFEDDIYAYFENEPDADSLYVKLVEEFERCILSYFGFHWNHCDILISQVLSSDISEPKKKLKNIVMAATRDQRFERVAKSLKVASVFNTLVEEIKAMGIAVNDDSQCTEVMAPVAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDVIYRALRSTGHHDMIRTAELAERKNTAFVDVSPEETVQKNAFERFKDVDESSSFKEARALAEASQNGAPFNQGFGNSPGSLSARKIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYREICLDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHQGVHGLGPELACQIVKSIGEKDVLKKFAYEGLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICDVYFEWPSERTNGYILPCIAERDLRRFANLRSTSSELGLNLPLHEGLESPADGRRSSESSYRIGDNGTSGGTN 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01716 822 Pfam Zeta toxin 447 508 IPR010488 GO:0005524|GO:0016301
Vifa5g01716 822 Gene3D - 643 704 - -
Vifa5g01716 822 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa5g01716 822 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa5g01716 822 SUPERFAMILY RING/U-box 13 66 - -
Vifa5g01716 822 FunFam Flap endonuclease GEN-like 1 643 700 - -
Vifa5g01716 822 Gene3D - 436 528 IPR027417 -
Vifa5g01716 822 SMART xpgineu 570 643 IPR006086 GO:0004518
Vifa5g01716 822 Pfam XPG I-region 585 658 IPR006086 GO:0004518
Vifa5g01716 822 MobiDBLite consensus disorder prediction 792 822 - -
Vifa5g01716 822 Gene3D - 532 641 - -
Vifa5g01716 822 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa5g01716 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 67 IPR013083 -
Vifa5g01716 822 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa5g01716 822 MobiDBLite consensus disorder prediction 152 183 - -
Vifa5g01716 822 Coils Coil 195 229 - -
Vifa5g01716 822 MobiDBLite consensus disorder prediction 146 183 - -
Vifa5g01716 822 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 643 780 IPR036279 -
Vifa5g01716 822 PANTHER UNCHARACTERIZED 248 522 IPR044802 -
Vifa5g01716 822 SUPERFAMILY PIN domain-like 585 658 IPR029060 -
Vifa5g01716 822 CDD H3TH_XPG-like 646 687 - -
Vifa5g01716 822 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 594 614 IPR006084 -
Vifa5g01716 822 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 648 663 IPR006084 -
Vifa5g01716 822 MobiDBLite consensus disorder prediction 802 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01716 Vifa-Chr5 502681611 502687510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01716 586 679 Core DNA Replication Machinery Family AT5G26680 34.694 6.49e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01716 - - gmx:100794775 438.728