Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01714 ATGTCTGCTTCTTCACCCACCGATTCAAACCCTCCTTCCGCCGTTCCTCTTCCACTTTCCCTACCTGCACCACCACCACCACCAACCACCTCCCGTCGTCTTCCTCCGCCCTGCTGGACACCGGAGGAAACCTCCGCCCTAATCGACGCTTACCGTGATAAATGGTACTCTCTCGGCCGAACGAATCTCAAAGCCATCCATTGGCAGGAAGTCGCCGACGCTGTCACCGCTTGTTGCCCTAACGCTTCGCCGACGAGCAAAACCGCCGTTCAGTGCCGTCACAAAATGGAGAAACTGAGAAAACGTTACCGATCTGAGATTCAACGGCTCAGATCTCTCCCGATTCCGAGATCTCGTTCGTCTTCTTCTTGGGCTCATTTCAAATCCATGGATTCCATGGAAAAAGGTCCTTCTCCTCCTTCTCCACCTTCTCCACTTTCTCCACCGCCCAAACTTGAAAATCATAACCATCTCAACCACCGTGAAACCCTAGTTGATAACGATGGTTTCGATGACGACGATCTTTACGAGGAACTCCGAAGCGGTTCTGGAAATAAATTCTACCGGAATGGATCTTCTGGTGGTGGATTCCGGATCCGGATCCCAACTGGTGTGAGTGTTGCACAACCTGGATCTAAATTCTACGGCGGACACCATCAGAAAATGAACGTGAACATGAACAGTCACCAGATGGAATCGGGTTCTCGCGGTTATATCAACGGTGGAACGAGGCTTGTGAAGGAGAAGATTGGGTTGGGGAAGAGAGAGAGGGAGAGAGACGTAGAGAGAGAAAGAGAAAGAGACCCTATTGGTGAAATGGTGAATGCTATTAAGGTTTTGAGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCTAGAGAGATCGAAACGATGCGAATGGAGATGGAGATGAAGCGGACTGAAATGATTCTTGAGTCTCAGCAGAGAATTGTTGAAGCATTTGCCAAGGCGGTTTCTGAGAAGAACAAGAAGAGGAAACTTCATAAGAGTAATAGCAACAACAACATTAACAACAACATAGCTTCGCCTTCGGAATCGTAG 1071 0.4902 MSASSPTDSNPPSAVPLPLSLPAPPPPPTTSRRLPPPCWTPEETSALIDAYRDKWYSLGRTNLKAIHWQEVADAVTACCPNASPTSKTAVQCRHKMEKLRKRYRSEIQRLRSLPIPRSRSSSSWAHFKSMDSMEKGPSPPSPPSPLSPPPKLENHNHLNHRETLVDNDGFDDDDLYEELRSGSGNKFYRNGSSGGGFRIRIPTGVSVAQPGSKFYGGHHQKMNVNMNSHQMESGSRGYINGGTRLVKEKIGLGKRERERDVERERERDPIGEMVNAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNKKRKLHKSNSNNNINNNIASPSES 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01714 356 Coils Coil 93 113 - -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 114 128 - -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 341 356 - -
Vifa5g01714 356 FunFam Trihelix transcription factor ASIL2 39 105 - -
Vifa5g01714 356 Pfam Myb/SANT-like DNA-binding domain 37 133 IPR044822 -
Vifa5g01714 356 Gene3D - 39 105 - -
Vifa5g01714 356 ProSiteProfiles Myb-like domain profile. 39 100 IPR001005 -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 329 356 - -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 11 35 - -
Vifa5g01714 356 SMART 118neu2 46 138 IPR006578 -
Vifa5g01714 356 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 13 331 IPR044823 -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 110 156 - -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 136 150 - -
Vifa5g01714 356 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01714 Vifa-Chr5 502477826 502478896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01714 38 133 Trihelix Transcription Factor Family AT3G14180 32.292 1.18e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g01714 Myb_DNA-bind_4 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01714 - - mtr:11426900 413.69