Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01702 ATGAACTATTTGACAGCGTGTTTTCGGCCAGGTTTGGATCGATATACACGCGGTGGTTCAGATGCTGGTGGTAAAAGGGAGGGACTCTTGTGGTACAAAGATTCAGGGAAGCATTTGAATGGTGAGTTTTCAATGGCTGTGGTTCAAGCCAACAACTTATTGGAGGATCAGAGCTATATTGAATCGGGTAGTTTGAGTTCGAGTGGTTCTGGACCGTACGGTACGTTTGTTGGTGTTTATGACGGCCATGGAGGGCCGGAGACATCGAGGTTTATCAATGATCACCTAGTTTGTCATCTCAAAAGGTTTACTGCAGAGCAACAATCAATGTCAGTGGATGTAATTCGCAAGGCAATCCAAGCAACGGAAGATGGATTTATGTCTCTTGTTACCAAACAGTGGTCCATGAAACCGCAAATTGCATCGGTTGGATCCTGCTGTCTTGTCGGTGTAATTTGTAATGGAACTCTTTATATAGCAAATCTCGGTGATTCCCGCGCCGTTTTGGGAAGAGCAGTCAAAGCAACCGGGGAGGTTTTAGCCGTGCAATTGTCAACCGAACACAATGCAGCTATAGAATCAATAAGACATGAACTGCGATCTGTGCACCCTGGCGATTCAAATATCGTTGTTTTGAGGCATAATATATCTAGATCTATTGGCGATGTATATCTGAAAAAGGCCGAGTTCAATAGAGAACCTCTATATCCAAAGTTTCGGCTTCGTGAGCCGTTCAAGATGCCAATATTGAGCTCAGAACCATCGATATCAGTTCACCAGTTGCAGCCACACGATCAATTTATTATATTTGCATCTGACGGGCTCTGGGAGCATCTTAGCAATCAAGAAGCAGTTGACATAGTTCAAAATAATCCTCGCTCGGGAATTGCAAGGAGGCTAGTGAAAGCTGCACTTCAAGAAGCGGCGAAAAAGAGAGAAATGAGATACTCAGACTTAAAAGATATTGATCGTGGGGTTCGTAGGCATTTCCACGACGATATCACCGTGATTGTCGTGTTCATCGACTCAAATCTCATGAGTAGTGCAAGCAATGTTAAGTTCCCTACTATTTCCGTTCGAGGGGGCGAAGCTGGTGCTAGCTGA 1104 0.4447 MNYLTACFRPGLDRYTRGGSDAGGKREGLLWYKDSGKHLNGEFSMAVVQANNLLEDQSYIESGSLSSSGSGPYGTFVGVYDGHGGPETSRFINDHLVCHLKRFTAEQQSMSVDVIRKAIQATEDGFMSLVTKQWSMKPQIASVGSCCLVGVICNGTLYIANLGDSRAVLGRAVKATGEVLAVQLSTEHNAAIESIRHELRSVHPGDSNIVVLRHNISRSIGDVYLKKAEFNREPLYPKFRLREPFKMPILSSEPSISVHQLQPHDQFIIFASDGLWEHLSNQEAVDIVQNNPRSGIARRLVKAALQEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFIDSNLMSSASNVKFPTISVRGGEAGAS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01702 367 ProSiteProfiles PPM-type phosphatase domain profile. 61 341 IPR001932 -
Vifa5g01702 367 FunFam Phosphatase 2C family protein 31 351 - -
Vifa5g01702 367 SUPERFAMILY PP2C-like 51 342 IPR036457 -
Vifa5g01702 367 Pfam Protein phosphatase 2C 68 310 IPR001932 -
Vifa5g01702 367 Gene3D - 32 353 IPR036457 -
Vifa5g01702 367 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vifa5g01702 367 SMART PP2C_4 34 339 IPR001932 -
Vifa5g01702 367 PANTHER PROTEIN PHOSPHATASE 40 339 IPR015655 GO:0004722|GO:0006470
Vifa5g01702 367 CDD PP2Cc 43 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01702 Vifa-Chr5 500507533 500509885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01702 1 362 PP2C-type Phosphatase Gene Family AT4G38520 70.620 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01702 - K01102 gmx:100794801 604.364