Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01701 ATGAACTATTTGACAGCGTGTTTTCGGCCAGGTTTGGATCGATATACACGCGGTGGTTCAGATGCTGGTGGTAAAAGGGAGGGACTCTTGTGGTACAAAGATTCAGGGAAGCATTTGAATGGTGAGTTTTCAATGGCTGTGGTTCAAGCCAACAACTTATTGGAGGATCAGAGCTATATTGAATCGGGTAGTTTGAGTTCGAGTGGTTCTGGACCGTACGGTACGTTTGTTGGTGTTTATGACGGCCATGGAGGGCCGGAGACATCGAGGTTTATCAATGATCACCTAGTTTGTCATCTCAAAAGGTTTACTGCAGAGCAACAATCAATGTCAGTGGATGTAATTCGCAAGGCAATCCAAGCAACGGAAGATGGATTTATGTCTCTTGTTACCAAACAGTGGTCCATGAAACCGCAAATTGCATCGGTTGGATCCTGCTGTCTTGTCGGTGTAATTTGTAATGGAACTCTTTATATAGCAAATCTCGGTGATTCCCGCGCCGTTTTGGGAAGAGCAGTCAAAGCAACCGGGGAGGTTTTAGCCGTGCAATTGTCAACCGAACACAATGCAGCTATAGAATCAATAAGACATGAACTGCGATCTGTGCACCCTGGCGATTCAAATATCGTTGTTTTGAGGCATAATGTATGGCGCGTCAAGGGCCTAATACAAATATCTAGATCTATTGGCGATGTATATCTGAAAAAGGCCGAGTTCAATAGAGAACCTCTATATCCAAAGTTTCGGCTTCGTGAGCCGTTCAAGATGCCAATATTGAGCTCAGAACCATCGATATCAGTTCACCAGTTGCAGCCACACGATCAATTTATTATATTTGCATCTGACGGGCTCTGGGAGCATCTTAGCAATCAAGAAGCAGTTGACATAGTTCAAAATAATCCTCGCTCGGGAATTGCAAGGAGGCTAGTGAAAGCTGCACTTCAAGAAGCGGCGAAAAAGAGAGAAATGAGATACTCAGACTTAAAAGATATTGATCGTGGGGTTCGTAGGCATTTCCACGACGATATCACCGTGATTGTCGTGTTCATCGACTCAAATCTCATGAGTAGTGCAAGCAATGTTAAGTTCCCTACTATTTCCGTTCGAGGGGGCGAAGCTGGTGCTAGCTGA 1131 0.4465 MNYLTACFRPGLDRYTRGGSDAGGKREGLLWYKDSGKHLNGEFSMAVVQANNLLEDQSYIESGSLSSSGSGPYGTFVGVYDGHGGPETSRFINDHLVCHLKRFTAEQQSMSVDVIRKAIQATEDGFMSLVTKQWSMKPQIASVGSCCLVGVICNGTLYIANLGDSRAVLGRAVKATGEVLAVQLSTEHNAAIESIRHELRSVHPGDSNIVVLRHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYPKFRLREPFKMPILSSEPSISVHQLQPHDQFIIFASDGLWEHLSNQEAVDIVQNNPRSGIARRLVKAALQEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFIDSNLMSSASNVKFPTISVRGGEAGAS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01701 376 Gene3D - 32 362 IPR036457 -
Vifa5g01701 376 SUPERFAMILY PP2C-like 51 351 IPR036457 -
Vifa5g01701 376 SMART PP2C_4 34 348 IPR001932 -
Vifa5g01701 376 CDD PP2Cc 43 350 IPR001932 -
Vifa5g01701 376 PANTHER PROTEIN PHOSPHATASE 40 348 IPR015655 GO:0004722|GO:0006470
Vifa5g01701 376 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vifa5g01701 376 ProSiteProfiles PPM-type phosphatase domain profile. 61 350 IPR001932 -
Vifa5g01701 376 Pfam Protein phosphatase 2C 68 319 IPR001932 -
Vifa5g01701 376 FunFam Phosphatase 2C family protein 31 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01701 Vifa-Chr5 500507533 500509885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01701 1 371 PP2C-type Phosphatase Gene Family AT4G38520 72.776 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01701 - K01102 gmx:100794801 630.557