Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01699 ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTTCAACGCCCTGACCTAGAAGTTCATGACGAGAGTCAAGATCAAGACGGAAACAATAACCATGAAGGGCTTGATCTAGTTTCACCAAATCATGGTCTGGGTGATGTTGTTGGTCGTAGACCAAGGGGCAGACCTCCAGGGTCAAAGAACAAACCTAAACCGCCGGTGATCATCACAAGAGAGAGTGCAAATACGCTTAGGGCTCATATTCTTGAGGTTAGTAGTGGTTGTGATGTGTTTGATTCAGTCGCTACCTATGCGAGGAAGCGTCAACGAGGGATCTGTGTTCTTAGTGGGAGTGGAACTGTCACTAACGTGATCCTGCGACAGCCTGCTGCCGCAGGATCAGTTGTGACACTTCAAGGAAGATTTGAGATATTATCTTTGTCTGGATCGTTTCTACCGCCCCCGGCTCCACCGGGGGCAACCAGTTTGAGTGTCTTTCTTGGTGGAGGTCAAGGTCAAGTGGTTGGAGGAAATGTTGTTGGTCCTTTGATAGCTTCCGGACCGGTTATCGTTATTGCTTCCTCGTTTACAAACGTAGCATATGAGAGATTACCATTGGATGAAGATGAATCTCTTCAGATGCAACAAGGGCAATCATCTGCAGGCGGCGGCGGTGGTGGTGGCGGTGGTGGTGATGGTGTTAATAACTCTTTCCCGGACCCGTCTTCGGGGCTTCCATTCTTCAATTTACCTCTAAATATGCCTCAATTACCTGTGGATGCTTGGGCTGGAAACTCTGGTGGAAGACAATCTTATTGA 813 0.4834 MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVILRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGGGGGGDGVNNSFPDPSSGLPFFNLPLNMPQLPVDAWAGNSGGRQSY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01699 270 CDD DUF296 83 165 IPR005175 -
Vifa5g01699 270 FunFam AT-hook motif nuclear-localized protein 82 209 - -
Vifa5g01699 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 210 - -
Vifa5g01699 270 Gene3D - 82 217 - -
Vifa5g01699 270 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Vifa5g01699 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 223 IPR014476 GO:0003680
Vifa5g01699 270 MobiDBLite consensus disorder prediction 208 247 - -
Vifa5g01699 270 MobiDBLite consensus disorder prediction 24 72 - -
Vifa5g01699 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01699 Vifa-Chr5 499807987 499808799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01699 1 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.192 1.21e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01699 - - gmx:100814613 413.69