LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g01695	ATGCAATCCTTCTGCTTATTCATCTTGTTTATGTTCCTGTTCTTCTCCTCAGAGGCATCACTAGCTTCACACAAATCCAATAATAGAAGGATCCTTCACGAACCCTTTATACCATTGAACTCACTCCCTCCATCAGAACTACCTAAACCACCACCAACACCACCACCGTCACTTCATTCTCCACCTTCAACCCCAAACCCCAAACACCCATTTTCCACCACCATTCCCACAGACGACAACAACCCAAACCAAAACCAAAACCAAAATGAATCACCGTTTTTCCCAAACTACCCTCTCTCACCACCACCACCTTCGCCACTCACATTCGCTTCATTCCCAGCTAACATCTCTGCCCTAATTCTCCCTCACACCCCTCAACCAGCTTCCTCTTCTAACAAACTCATCCCCATTGCACTCTCCGCCACCGCCATAGCCGCCGTCGCTGTTATCATCTCCGCCTTCATTTACTTCCGACGAAGCCGATATAACCGTCGCACTTCAACCGACAACAAGACTCTAAGATCCGACAGTAGCCTCGAACTTTTCCCGCGCAATGTCGAAACCGCAGTCGATGTAAACCCCTCCGAGTTTCTCTACCTCGGTACAGTTGTTAACTCGCGACAAATTGACACCGTTCCTCCTCGCGGCGGCGCTTCGGTGTCTCGAAAGCTTGAGTCGCCGGAGCTCCGTCCTCTCCCGCCGTTAGCGCGACTACCAACACCCCATGGCAACAGTTATTCAGATGAAGAAGACGAGGAGTTTTACTCGCCGAGAGGCTCCTCTCTTGGTTGCTTAGAAAGCTCAGGCGGCACAGGTTCGGGTTCCCGGCGAGCATTCTCCGCCATAGCCGCCGGAAGAAGCGATAAATCAAGCTCAATTTCATGTTCTCCCTCTTCTTTTGGTTCTCCGGAGCAGTCTCATTTGATTAGCCTCTCACCGCCGGCGAGTTCTAGTCCCCGGAGAACACAACAAAAATCACCTGAAACTACACCAATTCAGAACCAACATGTGCAATATCGTTCTTCTTCTTCTTCATCGTTCTCTTCACCACGCTCAACACCAGAGAGAGATTTTGATGAAGAAAAAGAAAATGTTTCTTTATCCTCAAATGCACATGCACATGCATCATCGTCGTCATCATCATCACTGTCATTACAAGAGAGATTCATGGAGAAAAATGAAAAGGCTTCTTTATCGGAACAACCGCCAAGGATATCGAATCATTCTAGTGCATCATCTTCAGCTTTTTCTCTTCCCTCTTCACCAGAGAAAATGACGATGATGCAGCAAGGTTTTGATCAGTCTCCAAGAATGTCAAGCGTTTCCGACGGGTTAAAGCTACCCGGTCTGTCATCATTGCCATTGTCACCCGCCCTACTTTCATCTCCTGAAACAGAAAGAGGAGGGTTTAGCTGCAATCCGAACCAATGGGGAACATTTTCTTATGCTATGCTTGTGCCACAGAGGAAACATTGGGAGGTTCCGATTCTCCCGAAGCCTATAGCTCCTCCACCGCCGCCTCCTCTGCCACGGCAAAGGAGGCATTGGGAAATGGCAGCAACCTCTGCTATTGTTGATCAGCCTCGGTCGATTTTGAAGCCTCCTGTGTTAGTACCTCCTTCGAGGCCTTTCGTGTTGCAAAACCAAACAGCAAATGAGTCTTTGGGGGAAACTGAAGAGAGTTCAAAACCTAAGTTGAAGCCGTTGCATTGGGACAAAGTGAGAACGAGTTCTGATCGCGAAATGGTGTGGGATCAGATGAATTCCATGTCGTTTAAATTGAATGAGGAAATGATTGAGACGTTGTTTGTAGTGAACACATCAAACCAAAAGCCGAAGGATGCTACTCCACATTCCGTTCTTCCCTTGCCAAATCAGGAGGACAGAGTACTTGATCCGAAGAAGTCTCAAAATATTGCAATCTTACTCAAGGCACTTAATGTCACAATAGAAGAAGTGTGTGAAACACTTTTAGATGGTAGTAGTGATACACTTGGAGCAGAGCTACTTGAAAGCTTGTTAAAAATGGCACCAACCAAGGAAGAAGAACGTAAATTGAAGGAACATAAAGATGGCTCACCAACCAAGCTTGATCTTGCTGAGAATTTTTTGAAGGCGGTGCTTGATATACCTTTTGCATTTAAAAGGGTTGAAGCAATGCTTTACATGGTTAACTTTCAATCTGAAATAGAGTATCTTAGAAAATCATTTCAAACTCTAGAGGTTGCCTGTGAAGAGTTGCGAAGTTGTAGAATGTTCTTGAAACTTCTAGAGGCTGTACTTAAAACTGGGAACCGAATGAATGTGGGAACAAATCGCGGTGATGCGGAGGCCTACAAACTCGATACACTTCTCAAGTTGGCTGATGTCAAAGGCGCAGACGGGAAAACTACTCTACTGCATTTTGTTGTACAGGAAATTATTAGAACCGAAGGTGCTCGTCTCTCTTCTACTAACCAAACTACAAACCCTACTTTGAGCGAAGATGTTAAGTGCAGGAGACTTGGCCTACAAGTTGTTTCTAATCTGAGTTCAGAGCTATCAAATGTAAAAAGGGCCGCTACTATAGATTCTGAAGTTCTCAGCAGCGACGTCTCTGAACTTTCCAAAGGAGCTACAAACATAACTGAGATTGTGCAATTAATCGAAAAGGCGGGATTGGATGAAACCAGTAAAAAATTCACAGAGTCGATGAATAATTTCGTTAGAATGGCTGAGGACGAAATCATGAAAATTCAAGCACAAGAAAGTGTTGCTTTGACTCTTGTGAAGGAGGTTACAGAGTATTTCCATGGAAACTTATCAAAGGAAGAAGCTCATCCATTAAGAATCTTCTTGGTTGTAAGAGATTTTATGACTATTCTCGACAGTGTCTGCAAAGAAGTCGGTATGATAAACGAGCGAACTACGGTTAGTTCGGTGCATAGATTTCCTGTTCCGGTTAATCCAATGCTTCCTCCACAACCTCTTCCTGGATTACATGAAAGGAAAGATTGTAGTAACTCTTCAGATGATGAAAGTCCATCATCACCTTAG	3036	0.4489	MQSFCLFILFMFLFFSSEASLASHKSNNRRILHEPFIPLNSLPPSELPKPPPTPPPSLHSPPSTPNPKHPFSTTIPTDDNNPNQNQNQNESPFFPNYPLSPPPPSPLTFASFPANISALILPHTPQPASSSNKLIPIALSATAIAAVAVIISAFIYFRRSRYNRRTSTDNKTLRSDSSLELFPRNVETAVDVNPSEFLYLGTVVNSRQIDTVPPRGGASVSRKLESPELRPLPPLARLPTPHGNSYSDEEDEEFYSPRGSSLGCLESSGGTGSGSRRAFSAIAAGRSDKSSSISCSPSSFGSPEQSHLISLSPPASSSPRRTQQKSPETTPIQNQHVQYRSSSSSSFSSPRSTPERDFDEEKENVSLSSNAHAHASSSSSSSLSLQERFMEKNEKASLSEQPPRISNHSSASSSAFSLPSSPEKMTMMQQGFDQSPRMSSVSDGLKLPGLSSLPLSPALLSSPETERGGFSCNPNQWGTFSYAMLVPQRKHWEVPILPKPIAPPPPPPLPRQRRHWEMAATSAIVDQPRSILKPPVLVPPSRPFVLQNQTANESLGETEESSKPKLKPLHWDKVRTSSDREMVWDQMNSMSFKLNEEMIETLFVVNTSNQKPKDATPHSVLPLPNQEDRVLDPKKSQNIAILLKALNVTIEEVCETLLDGSSDTLGAELLESLLKMAPTKEEERKLKEHKDGSPTKLDLAENFLKAVLDIPFAFKRVEAMLYMVNFQSEIEYLRKSFQTLEVACEELRSCRMFLKLLEAVLKTGNRMNVGTNRGDAEAYKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSSTNQTTNPTLSEDVKCRRLGLQVVSNLSSELSNVKRAATIDSEVLSSDVSELSKGATNITEIVQLIEKAGLDETSKKFTESMNNFVRMAEDEIMKIQAQESVALTLVKEVTEYFHGNLSKEEAHPLRIFLVVRDFMTILDSVCKEVGMINERTTVSSVHRFPVPVNPMLPPQPLPGLHERKDCSNSSDDESPSSP	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	70	94	-	-
	Vifa5g01695	1011	Gene3D	Formin, FH2 domain	562	972	IPR042201	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	42	98	-	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	42	69	-	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	210	443	-	-
	Vifa5g01695	1011	Pfam	Formin Homology 2 Domain	559	955	IPR015425	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	982	1011	-	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	368	387	-	-
	Vifa5g01695	1011	SMART	it6_source	556	970	IPR015425	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	261	275	-	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	399	441	-	-
	Vifa5g01695	1011	PANTHER	FORMIN-RELATED	356	1004	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	353	367	-	-
	Vifa5g01695	1011	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	556	981	IPR015425	-
	Vifa5g01695	1011	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	503	966	-	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	609	628	-	-
	Vifa5g01695	1011	MobiDBLite	consensus disorder prediction	285	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g01695	Vifa-Chr5	498324308	498327855	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g01695	522	997	FH2 protein (formin) Gene Family	AT3G25500	68.571	0.0	669

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g01695	-		-	gmx:100801837	953.355