Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01691 ATGAGTTATGGTACTGAGAGTGACATCTTATGCTTAAGAAGAGTGAAAGAAACACTTAAAGACCCAAACAATTACTTGGAATCTTGGAATTTCAACAATAGAACTGAAGGGTTTATTTGCAAGTTCACTGGTGTTGAATGTTGGCATCCTGATGAAAGTAGGGTTTTGAATCTCAAACTTTCCAATATGGGACTTAAGGGAGAGTTTCCTCGTGGCATTCAGAATTGCTCGAGTTTGACAGGATTAGATCTTTCATTGAACAGCCTCTCGAAAACGATTCCAAATGATATATCTAGCCTTGTTGCCTATGTGGTCACTCTTGATCTGTCTTCGAATGATTTTACGGGGGTGATTCCCGTGTCGCTTTCAAATTGTACCTATCTTAATACTCTTAGACTTGACCAAAACCAACTCACCGGTCAAATTCCTCTGCAATTTGCTTCGCTTACGCGGATTAAGATGTTTAGTGTTTCGAATAATCTTTTGTCCGGACAAGTTCCGAATTTTAGGGAGGGTATAGTTACAAAAGATAACTATGCAAATAATTCAGCACTCTGTGGCGGTCCATTGGATGCTTGCGGCGGGTCTTCGAAGACTAACACTGCGGTTATAGCTGGAGCAGCTATTGGTGGTGTGACTCTTGCAGCATTAGCGGTGGGCGTTGGAATGCTTTTCTATGTGCGCCGTCTTTCGCACAGGAAAAAGGAAGAAGATCCCGAAGAAAACAAGTGGGCAAGAATCATAAAGGGAACCAAAAAAATAAAGGTTTCGATGTTTGAGAAGTCGATTTCAAAAATGAGCTTGAATGATCTCATGAAGGCTACGAATAATTTCAGCAAAAGCAATGTCATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTTCTCGAGGATGGCACATCACTCATGGTTAAGAGATTGCTGGAATCTCAACACTCGGAGCAAGAGTTTACAGCTGAGATGGCTACACTGGGAACAGTGCGACATCGAAACTTGGTTCCTCTTTTAGGTTTTTGCCTCGCCAAAAAGGAGAGACTTTTGGTCTATAAAAATATGCCAAACGGTACTCTTCACAATCAACTACATCCTGAAACTGGCGAATGCACTATGGAGTGGTCTACAAGGCTCAAAATTGCAATCGGAGCAGCCAAGGGATTCGCATGGCTTCACCACAACTGCAATCCACGCATCATCCACCGAAACATAAGCTCTAAGTGCATCCTGTTGGACGCGAATTTCGAGCCCAAAATCTCCGATTTCGGCCTTGCCAGATTAATGAACCCGATCGATACTCATTTGAGTACTTTTGTAAATGGCGAGTTTGGTGATTTAGGCTATGTTGCTCCCGAGTATACAACAACTCTGGTAGCTACACCTAAGGGTGATGTTTACAGCTTTGGAACCGTCCTTCTCGAGCTGGTAACTGGCGAAAGACCTACACATATTTCAAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATCATGCAGCTATCAGTCAACGCAAGCCTAAAAGACGCAATCGATGAATCACTAACCGGAAAAGGTGTTGATCATGAACTTTTTCAGTTTCTTAAAGTTGCATGCAACTGTGTTACTTCAACTGCAAAGGAGAGGCCAACGATGTTCGAAGTATACCAGTTTCTAAGAGAGATTGGAAGTAAATATAATTTCATAACCGAGGATGAGATAATGGTGCTTACAGAAAATGGTGATGCTGGTAAGTTGGAAGAACTTATCGTAGCGCGCGAGACGTAA 1767 0.4216 MSYGTESDILCLRRVKETLKDPNNYLESWNFNNRTEGFICKFTGVECWHPDESRVLNLKLSNMGLKGEFPRGIQNCSSLTGLDLSLNSLSKTIPNDISSLVAYVVTLDLSSNDFTGVIPVSLSNCTYLNTLRLDQNQLTGQIPLQFASLTRIKMFSVSNNLLSGQVPNFREGIVTKDNYANNSALCGGPLDACGGSSKTNTAVIAGAAIGGVTLAALAVGVGMLFYVRRLSHRKKEEDPEENKWARIIKGTKKIKVSMFEKSISKMSLNDLMKATNNFSKSNVIGTGRSGTVYKAVLEDGTSLMVKRLLESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHNQLHPETGECTMEWSTRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDANFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHISKAPETFKGNLVEWIMQLSVNASLKDAIDESLTGKGVDHELFQFLKVACNCVTSTAKERPTMFEVYQFLREIGSKYNFITEDEIMVLTENGDAGKLEELIVARET 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01691 588 ProSiteProfiles Protein kinase domain profile. 278 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01691 588 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 353 565 - -
Vifa5g01691 588 FunFam Nuclear pore complex protein NUP107 5 168 - -
Vifa5g01691 588 SUPERFAMILY L domain-like 5 172 - -
Vifa5g01691 588 SUPERFAMILY Protein kinase-like (PK-like) 255 552 IPR011009 -
Vifa5g01691 588 Pfam Protein tyrosine and serine/threonine kinase 281 552 IPR001245 GO:0004672|GO:0006468
Vifa5g01691 588 CDD STKc_IRAK 284 555 - -
Vifa5g01691 588 Gene3D Phosphorylase Kinase; domain 1 239 351 - -
Vifa5g01691 588 Gene3D Transferase(Phosphotransferase) domain 1 353 573 - -
Vifa5g01691 588 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 168 - -
Vifa5g01691 588 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 239 352 - -
Vifa5g01691 588 Gene3D Ribonuclease Inhibitor 5 194 IPR032675 -
Vifa5g01691 588 Coils Coil 584 588 - -
Vifa5g01691 588 Pfam Leucine rich repeat N-terminal domain 6 48 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01691 Vifa-Chr5 497204809 497206669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01691 6 566 Receptor kinase-like Gene Family AT3G28450 46.303 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vifa5g01691 PK_Tyr_Ser-Thr 1.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01691 - - gmx:100801294 942.184