Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01689 ATGGAGGAATCATTGGAGAAACTGATTTCTTATATGGAAATGGAAGATGAAGTGATGAATCAAAGTAGTAACTCATTTGATGAGCAAGAGTTTCTCAAAGATATCATCCTTGAGGAACCAGAATGTGAACCCTTTTCTTATTTTTGTTCCAATGAAATCCAAATCAACAGTTCCATTTCTGCAGGAAATATTAACATTGAAGGTGGTGTCACTAGTCCCACAAATAGTATTTTGTCCTTTGATTACGATATTGAAGCATTCCACAAAAGTTATAGTTCAAACTCTATAATTTCTTTGGAAAGATCATGTGTTGGTTCTCCAGCTACATACCTATTATCTTTTGATAATTCTAGTGTTGAACCAATTATTGAACCATTGTCAAATAAAAGAAGGAGTGTGAAGAAAGATGAGACAAAGTTGAAGGAAGCAACAAAGAGGGTTAGAAGGTCTTGTGAGACAGTGCAAGATCACTTGATGGCTGAGAGGAAAAGGAGAAGGGAGTTAACTGAGAATATTATAACACTTTCAGCCATGATTCCTGGCTTGAAAAAGATGGACAAGTGTTATGTACTTAGTGAAGCTGTGAGTTACACAAAACAGCTTCAAAAACGGATTAAAGAATTGGAGAATAATCAAAACAAAGATAACATAGTGATTAATCCAGCAATATTCAAGTGGAAATCTCAAGCTTCATCAAATAAAAGGAAGTACTCAGAATCACTGCTTGAGGTTGAAGCTAGAGTCATGAAAAAGGAAGTACTCGTTAGAATTCAGTGTGAGAAGAGAAAGGACATAGTGTTCAAAATTCATGAATTGCTTGAAAAGTTCAATCTCAATATAACCAGTAGTAGCGTATTGCCATTTGGTGCTTCAGTTTTTGTAATTAACATTTTTGCTCAGATGGATGAAGAAGACAGCATAAGCATGGATGAGCTTGTGAAAAATCTGAAAAAATATCTGTTGGAGGTATGTGGGATTCAATAG 984 0.3496 MEESLEKLISYMEMEDEVMNQSSNSFDEQEFLKDIILEEPECEPFSYFCSNEIQINSSISAGNINIEGGVTSPTNSILSFDYDIEAFHKSYSSNSIISLERSCVGSPATYLLSFDNSSVEPIIEPLSNKRRSVKKDETKLKEATKRVRRSCETVQDHLMAERKRRRELTENIITLSAMIPGLKKMDKCYVLSEAVSYTKQLQKRIKELENNQNKDNIVINPAIFKWKSQASSNKRKYSESLLEVEARVMKKEVLVRIQCEKRKDIVFKIHELLEKFNLNITSSSVLPFGASVFVINIFAQMDEEDSISMDELVKNLKKYLLEVCGIQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01689 327 ProSiteProfiles ACT domain profile. 254 327 IPR002912 -
Vifa5g01689 327 Gene3D - 148 215 IPR036638 GO:0046983
Vifa5g01689 327 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Vifa5g01689 327 SMART finulus 158 207 IPR011598 GO:0046983
Vifa5g01689 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Vifa5g01689 327 Coils Coil 126 146 - -
Vifa5g01689 327 PANTHER BHLH TRANSCRIPTION FACTOR 10 320 - -
Vifa5g01689 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 212 IPR036638 GO:0046983
Vifa5g01689 327 Coils Coil 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01689 Vifa-Chr5 496154407 496158587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01689 148 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 36.041 7.88e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g01689 HLH 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01689 - - tpra:123888201 456.062