Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01671 ATGGCTTCTATGAACTTGTTAGGTTTCTCTCTCTCACCACAAGAACAACACCCATCTTCTACTCAAGATCAAACGGTGGTGCCTTCTCTTTTTGGTTTCAACCCTCACGATGATGGTTCTGGTGTTCAACAAGGAGATCACTGCTTTGATCTCACTTCTCACTCATCAACTCCTCACCATCTTTCTCATCCTTTTTCCATTTATGAAGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGGAGAACTACAACAACCAAACTCTACTATTGGGAAGTTCATGCAGGACCCAAAATGTGAACAATAACAATCAACAGGTGCAACCAAAGCTAGAAAACTTCCTCGGTGGAAACTCTTTCACCGATCATCAGAATGAATACGGTGGCAACAACAACTCATACTCTTCGTTACACCTTCCGGCTACTCAACCAGAACCATCTTGTGGCGGTGGCGGCAGCGGTGGTGGTGATGATAGCACAAATAACAACAATAATAACTCCATAGGTTTATCAATGATAAAAACATGGCTAAGAAACCAGCCACCGCCAGAAAACAACAACAACAGCAACGAAAATGGAGCAGCACGTGTGCAGACACTATCACTCTCCATGAGTACTGGTTCACAGTCAAGCTCATCAGTGCCTCTTCTCAATGCAAATGCAATGAACGGTGAGATTTCATCGTCCGAAAACAAACAACCACCAACAACTGCTGTAGCACTTGATAGTAACCAAACCGGCGCCATCGTTGAAAGTGCTGCGCCTAGAAAATCCATTGATACCTTCGGACAAAGAACTTCCATTTACCGCGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAACAGTTGCAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGTTTACTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCTATAAGTCATTATGAAAAAGAGTTGGAAGAAATGAAACACATGACAAGGCAAGAGTATGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTACCGAGGAGTAACTAGACATCATCAACATGGTAGATGGCAAGCAAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTAGCAGCCATAAAGTTCAGAGGACTAAGTGCGGTTACAAATTTCGACATGAGTCGATACGATGTGAAAACCATACTCGAGAGCAGCACTTTACCCATCGGTGGTGCTGCAAAGCGTTTGAAAGATATGGAGCAAGTTGAATTATTGAGTGTTAATGTGGTGGATAATATTGGCCAAGATCATCATCATCATAGCATCATCAATAATAATGCTACTAATTCCCATTTAACAGATCAAGTCATCAATAACTATGCAGCAGCTAATTGGCATGCTCTTTCATTCCAACAACCACAACACCCTTACAATACCAACAACATGCAGTTGCAGCATTACCCTTACGGTGCACAAACTCAAACTCAGAAGCTTTGGTGTAAGCAAGAACAAGATTCTGATGATCATAATACTTATACTACTACTACTGATCATCATATTCATCATCAACAGCTACAGTTAGGGAATAACAACAATAACAATAATACTCACAATTTCTTTGGTTTGCAAAATATCATGAGTATGGATTCTGCTTCTATGGACAATAGTTCTAGTTCAAATTCTGTTGTTTACGGTGGTGGAGATCATGGTGGCTATGGAGGAAACGGCGGATATATGATTCCAATGGCTACTACTACTATTATGGGAAATGATGGTAGTAACCAAAACCAAAATCAAAGAAGCAGCAACAACAGTTTTGGTGATAGTGATCAAATAAAGGGATTTGGTTATGAGAATGTTTTTGGAGCTAGTGATCCTTATCATGCACATGCAAGGAATTTGTACTATCAGCAGCAACAGTTATCTGTTGATGAAGGATCAAATTGCAGTAACAATAATAATTGGGTTCCAACTGCTATTCCAACACTTGCACCAAGGACTACCAATGTGTCTCTTTGTCCACCTTTCACTTTGTTGCATGAATAA 2163 0.4078 MASMNLLGFSLSPQEQHPSSTQDQTVVPSLFGFNPHDDGSGVQQGDHCFDLTSHSSTPHHLSHPFSIYEAFHTNNNIHTTQDWKENYNNQTLLLGSSCRTQNVNNNNQQVQPKLENFLGGNSFTDHQNEYGGNNNSYSSLHLPATQPEPSCGGGGSGGGDDSTNNNNNNSIGLSMIKTWLRNQPPPENNNNSNENGAARVQTLSLSMSTGSQSSSSVPLLNANAMNGEISSSENKQPPTTAVALDSNQTGAIVESAAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELLSVNVVDNIGQDHHHHSIINNNATNSHLTDQVINNYAAANWHALSFQQPQHPYNTNNMQLQHYPYGAQTQTQKLWCKQEQDSDDHNTYTTTTDHHIHHQQLQLGNNNNNNNTHNFFGLQNIMSMDSASMDNSSSSNSVVYGGGDHGGYGGNGGYMIPMATTTIMGNDGSNQNQNQRSSNNSFGDSDQIKGFGYENVFGASDPYHAHARNLYYQQQQLSVDEGSNCSNNNNWVPTAIPTLAPRTTNVSLCPPFTLLHE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01671 720 PRINTS Ethylene responsive element binding protein signature 272 283 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 PRINTS Ethylene responsive element binding protein signature 413 433 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 ProSiteProfiles AP2/ERF domain profile. 373 431 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 SUPERFAMILY DNA-binding domain 270 339 IPR016177 GO:0003677
Vifa5g01671 720 ProSiteProfiles AP2/ERF domain profile. 271 337 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 SMART rav1_2 373 437 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 SMART rav1_2 271 343 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 MobiDBLite consensus disorder prediction 117 145 - -
Vifa5g01671 720 MobiDBLite consensus disorder prediction 627 648 - -
Vifa5g01671 720 MobiDBLite consensus disorder prediction 157 171 - -
Vifa5g01671 720 FunFam AP2-like ethylene-responsive transcription factor 372 433 - -
Vifa5g01671 720 CDD AP2 372 433 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 Pfam AP2 domain 271 329 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 Pfam AP2 domain 373 423 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 CDD AP2 270 339 IPR001471 GO:0003700|GO:0006355
Vifa5g01671 720 MobiDBLite consensus disorder prediction 117 171 - -
Vifa5g01671 720 FunFam AP2-like ethylene-responsive transcription factor ANT 270 339 - -
Vifa5g01671 720 Gene3D AP2/ERF domain 373 433 IPR036955 GO:0003700|GO:0006355
Vifa5g01671 720 Gene3D AP2/ERF domain 271 339 IPR036955 GO:0003700|GO:0006355
Vifa5g01671 720 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g01671 720 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 533 - -
Vifa5g01671 720 SUPERFAMILY DNA-binding domain 372 433 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01671 Vifa-Chr5 491728096 491731385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01671 170 458 AP2-EREBP Transcription Factor Family AT5G17430 71.626 4.32e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa5g01671 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01671 K09285 - gmx:100797584 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01671 5 491728096 491731385 Vifa5g01671 5 491728096 491731385 ECH