Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01650 ATGGAAAAGTTCCTTGTACCACTCTGCATTCTTTTGATGCTTCTCTCTGTTAAAGCTGCTCCTCGAAGATCTCTCATCACACATCTCCCTGGTTTTTATGGCAATTTCCTCTCCCACCATTACTCAGGATATGTAAGTATTGATGGAAATGCTGAAACTGGAAAGAACCTGTTCTACTACTTTGTTAGTTCAGAAAGAAATCCCAGAAAAGATCCTGTTGTTCTATGGTTGAATGGTGGACCTGGTTGTTCAAGCTTTGATGGATTTGTTTATGAACATGGACCATTCAATTTCAAGGCTGCAGAATCAAAAGAGAAACTACCCACTTTGCGTTTCAATCCTTACAGCTGGTCTAAGGTTTCCAACGTTATATATTTGGATTCACCAGCTGGTGTTGGGTTCTCTTACTCAAAGAACATAAGCAAATATTCAACTGGGGACCTACAAACAGCTTCGGATACTCATGCTTTTCTCTTGAAGTGGTTTGAGCAATTTCCAGAATTCCAAGCTAATCCATTTTATATTTCTGGAGAGTCTTATGCTGGAATTTATGTACCCACTCTAGCTTTTGAAATTGCTAAAGGTATCCAAAATCGAACAAAGCCCGCGATCAATTTGAAGGGTTATTTGGTGGGAAATGGTGTCACGGACCCAAAATTTGACAACAATGCTTTTATCCCATTTGTGCATGGGATGGGCCTTATATCAGACACTATTTATGAGGATGTGCATGCTTCTTGCAAAGAAAACTACTACAATTCTGATTCTGAGAGTGATCAATGTGCTAAGAGCATGGAAAAAGTTAGCAAGGCTATTCAAGGGCTTAATGTGTACAATATATTAGAGCCATGCCACCATGACCCACGAGTTGCAACAAACTTAACTTCTAATTTACCATTGAGTTTCCAAAATTTAGGATTAACAGAGAGACCTCTCCCAATAAGAAAGAGAATGTTTGGTAGAGCTTGGCCTTTTAGAGCACCGGTTAGAGATGGTCATGTTACCTTATGGCCTCAATTATTGGCCAACACTAGACACGTCCCTTGTGTCAGTGATGAAGTAGCAACATCGTGGTTAAACAACCCTTCCGTCAGAAAAGCCATTCATGTTGAGGCAGCAAGTGGTACATGGGAGTTATGTACTGATAGGATAAGTTTTGATCATGATGCTGGAGGCATGGTTCCTTACCATAAGAATCTAACGAAGTTGGGCTATAGAGCACTTATTTACAGTGGAGACCATGATATGTGTGTACCATTTACCGGAAGTGAAGCTTGGACGAGTTCTTTGGGATACAGAACTGTGGATGAATGGAGATCATGGATCTCTAATGACCAAGTTGCTGGGTTCTTACAATCTTACGAGCACAACCTTACCTTCCTCACAGTAAAGGGAGCTGGGCACACCGTACCGGAATATAAGCCAAGGGAGGCATTGGATTTTTACAGCCGTTGGTTGGATGGAAAATCAATTTAA 1476 0.4085 MEKFLVPLCILLMLLSVKAAPRRSLITHLPGFYGNFLSHHYSGYVSIDGNAETGKNLFYYFVSSERNPRKDPVVLWLNGGPGCSSFDGFVYEHGPFNFKAAESKEKLPTLRFNPYSWSKVSNVIYLDSPAGVGFSYSKNISKYSTGDLQTASDTHAFLLKWFEQFPEFQANPFYISGESYAGIYVPTLAFEIAKGIQNRTKPAINLKGYLVGNGVTDPKFDNNAFIPFVHGMGLISDTIYEDVHASCKENYYNSDSESDQCAKSMEKVSKAIQGLNVYNILEPCHHDPRVATNLTSNLPLSFQNLGLTERPLPIRKRMFGRAWPFRAPVRDGHVTLWPQLLANTRHVPCVSDEVATSWLNNPSVRKAIHVEAASGTWELCTDRISFDHDAGGMVPYHKNLTKLGYRALIYSGDHDMCVPFTGSEAWTSSLGYRTVDEWRSWISNDQVAGFLQSYEHNLTFLTVKGAGHTVPEYKPREALDFYSRWLDGKSI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01650 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vifa5g01650 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vifa5g01650 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vifa5g01650 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 458 471 IPR001563 GO:0004185|GO:0006508
Vifa5g01650 491 Pfam Serine carboxypeptidase 30 488 IPR001563 GO:0004185|GO:0006508
Vifa5g01650 491 FunFam Carboxypeptidase 348 490 - -
Vifa5g01650 491 ProSitePatterns Serine carboxypeptidases, histidine active site. 458 475 IPR033124 GO:0004185
Vifa5g01650 491 Gene3D - 346 490 - -
Vifa5g01650 491 SUPERFAMILY alpha/beta-Hydrolases 26 490 IPR029058 -
Vifa5g01650 491 FunFam Carboxypeptidase 19 305 - -
Vifa5g01650 491 Gene3D alpha/beta hydrolase 18 304 IPR029058 -
Vifa5g01650 491 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 475 IPR001563 GO:0004185|GO:0006508
Vifa5g01650 491 FunFam Carboxypeptidase 393 488 - -
Vifa5g01650 491 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01650 Vifa-Chr5 487209254 487212952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01650 354 491 Calmodulin-binding Proteins AT2G22960 45.324 1.03e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01650 K16296 - gmx:100790895 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01650 5 487209254 487212952 Vifa5g01650 5 487209254 487212952 ECH
Vifa5g01650 5 487209254 487212952 Vifa4g00958 4 278594580 278596385 PCT