Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01635 ATGGAACAAGACAAAAACGAAAGTAACATGAACGAAAGTATCAACGAAAACAAAAATGGTGGTGATGGAATCATAGTATCAGATCCGAAGGGAGAAAGGGTTATTGAGTTTCCTTGCAAAAGAAGCATAGCTGAGAGAAGGGGTTTCAATAAAAATGCAACAAGTATCAACACAGGAGGAGGAGTTATACGTTTGGATGCAACAATGAAAACCCCTTTTGTTTCTCTTCCAGCTCGATCACCACATCTCACAATACCACCGGGAATTAGTCCCACCGCATTGCTTGAGTCCCCGGTCATGCTTCCTAATTCTCAGGCCATGCCATCTCCCACCACGGGAAGTTTTCCCATGCTTCAACCTCCAATGCTCACTTCCATTTCAAAAGATGAAGGAAACATGGATATTTCTACTTCCTCTGATGTTGCTTCCTCTTCCAAATTCAAGTCTCAAGCCGATTTTAATTCTAATTCTCTAAATCAGGGTTCTAATAATTATCAAATGATGACTGGAGGGCATAAAGTGGATCAAATATTTGTTCAAGATCAAGCACCAATAGATTTTTCATTCTCTGAAGATTTTTCAAATAACTTTTTTATAAAAAATAGTGGATTTCCTTTATACAGTGATTTGAAAATGGTAGATATGATGGTTGATAACATTGATGTACCAATCTCTTATTCCGAAGAAGCTAGTGATGAAAGTAATCTTGTTGAAAATTCGATCCCTGTGGATGATATTGGACAACAACATGTCTTAGAAGTAGAACAAAAAGAAACATGTTATGCAATCGGAGCAAAGAACTCCGAGGATGGTTATAATTGGAGAAAATATGGACAGAAACAAGTAAAAGGAAGTGAGTTTCCAAGAAGCTACTATAAATGTACTCAACCGAGTTGTCAAGTCAAGAAAAAAGTTGAAAGATCACATGATGGCCAGATAACTGAAATCATTTACAAGGGTAGTCACAACCATGCCAAACCACATTCCAATCGCCTAGGATCAATACCTTCGAATGATGAGATTTTAGAAACTGCTGAAGCCAATGAAACATGTGATTCAGTATGGAGAAATAATCATTCGCGAGAAAAAGATGCAAACCATAACTTGGAGCGGAAGCTTGATGGTCAAGAAAGGACATCCCCGCCTTCTTTTACGACCGAGCTTTCAGATCCCGCCAAGAGAGCTATATCATCAGATGAAGCTAAAGAGAATTCTTCTGCATTTGTTAATCGTGATGGTAATAAAGATGGATCCACTCAAATAGTTTTACCAATTGAAGATGGTGCTGAAGATGGTGAATCAGAATCGAAAAGAAGGAAAAAGGAAAGCTATCCAACTGAACCAATGATGCCTGCGAGGGCTATTCGTGAGCCGCGAGTGGTGGTCCAAATCGAGAGTGAAATCGACATACTTGATGATGGTTATCGTTGGCGAAAGTATGGCCAAAAGGTTGTCAAAGGGAATCCAAACCCAAGGAGCTACTACAAATGCACAAGTGCTGGATGTAATGTAAGGAAACATGTGGAAAGAGCTTCACACAATTTAAAATTTGTTATCACTACTTATGAGGGAAAACATAACCATGAGGTTCCAACCGCTAAGAATAACCATCATATAAGTTCAAGTGATGTTGGTTTACATTCAAGTGGTGCTAATGCGTTACATGGGAGTGCCGGTATCATGAAGTCGGAAGCACATCAAACTCTTGCATCTCATTTTGATAGAAAACCCGATTTAAGCAATGAGTTTTTGCGGTCAAGTTTGATGGGAAGTTTCACTAATGATATGAAGTTTGGACCTTCTTCTATATCCCAAATGAAGTATTCTTCCTTGGATAATATCATACCTTATGGATGCTCCTATGGAATGAATCTCGAATGTGGTATTGCGCCTCAAGTTGGGCATATTCCTCCAATGTTCCCAGAATATCCAATGCCATTACCATTGAATCTTGCTTCATCTGGAAATTTTTCTCTTGATGGAATTAATTTCAACTATGCAAAACCAATGAATTATGTTCAGTCTTACCTTTCAAATCAGCAGATGAAGGACTTTGATACAGGACTTCTAAGGCCTAAAGAGGAGTTGAATGATGATTCTTTATATACTTCATGTCCAACCTCTTTTGATCATGCAAGTTCCTCACTGAATCCACCATCAACATCACCACCACAATCCATTTATCAAAGTGTCATGCAGAATTTCCCTTCATAA 2214 0.3857 MEQDKNESNMNESINENKNGGDGIIVSDPKGERVIEFPCKRSIAERRGFNKNATSINTGGGVIRLDATMKTPFVSLPARSPHLTIPPGISPTALLESPVMLPNSQAMPSPTTGSFPMLQPPMLTSISKDEGNMDISTSSDVASSSKFKSQADFNSNSLNQGSNNYQMMTGGHKVDQIFVQDQAPIDFSFSEDFSNNFFIKNSGFPLYSDLKMVDMMVDNIDVPISYSEEASDESNLVENSIPVDDIGQQHVLEVEQKETCYAIGAKNSEDGYNWRKYGQKQVKGSEFPRSYYKCTQPSCQVKKKVERSHDGQITEIIYKGSHNHAKPHSNRLGSIPSNDEILETAEANETCDSVWRNNHSREKDANHNLERKLDGQERTSPPSFTTELSDPAKRAISSDEAKENSSAFVNRDGNKDGSTQIVLPIEDGAEDGESESKRRKKESYPTEPMMPARAIREPRVVVQIESEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHNLKFVITTYEGKHNHEVPTAKNNHHISSSDVGLHSSGANALHGSAGIMKSEAHQTLASHFDRKPDLSNEFLRSSLMGSFTNDMKFGPSSISQMKYSSLDNIIPYGCSYGMNLECGIAPQVGHIPPMFPEYPMPLPLNLASSGNFSLDGINFNYAKPMNYVQSYLSNQQMKDFDTGLLRPKEELNDDSLYTSCPTSFDHASSSLNPPSTSPPQSIYQSVMQNFPS 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01635 737 SMART WRKY_cls 268 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 SMART WRKY_cls 471 530 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 FunFam WRKY transcription factor 255 328 - -
Vifa5g01635 737 Coils Coil 359 379 - -
Vifa5g01635 737 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g01635 737 SUPERFAMILY WRKY DNA-binding domain 265 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 MobiDBLite consensus disorder prediction 709 737 - -
Vifa5g01635 737 SUPERFAMILY WRKY DNA-binding domain 464 531 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 ProSiteProfiles WRKY domain profile. 466 531 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 ProSiteProfiles WRKY domain profile. 269 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 MobiDBLite consensus disorder prediction 401 417 - -
Vifa5g01635 737 Pfam WRKY DNA -binding domain 269 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 Pfam WRKY DNA -binding domain 472 529 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 FunFam WRKY transcription factor 33 458 524 - -
Vifa5g01635 737 MobiDBLite consensus disorder prediction 353 448 - -
Vifa5g01635 737 Gene3D WRKY domain 259 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01635 737 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 561 IPR044810 GO:0003700
Vifa5g01635 737 MobiDBLite consensus disorder prediction 378 392 - -
Vifa5g01635 737 MobiDBLite consensus disorder prediction 430 446 - -
Vifa5g01635 737 MobiDBLite consensus disorder prediction 355 377 - -
Vifa5g01635 737 Gene3D WRKY domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01635 Vifa-Chr5 481375055 481378979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01635 43 534 WRKY Transcription Factor Family AT5G56270 40.354 8.54e-93 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01635 WRKY 2.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01635 K18835 - gmx:100800211 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01635 5 481375055 481378979 Vifa5g01635 5 481375055 481378979 ECH