Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01632 ATGGGACTCATAGTAGAAGTTGAAACCGTTGATGAAAACGACGACGTTTTGATTCCACCTCCTAATTTCTCCATGGTGGAAGATTGCATTTACCGATCTAGCCTTCCCCAGCCTCCCAATTTTCCCTTTCTTCAAACGCTAAACCTTCGTTCCATCATATTCTTGTGTCCTGAACCCTATCCGGAAGAGAATTTGGAGTTCCTAAAGTCACAGAATATTCGCCTATTTCAATTTGGAATTGAGGGGAAAACGGAAGTTTCTTTACCTATTCTCAGGGATTCAATTATGGAGGCTTTGAAAGTTTTACTTGATGTGAGAAATCACCCTGTTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTGCTTAGTTGGTTGCTTCAGAAAGATTCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTATCAGCTATATGCTGGTGCTAAATCCAGGACAGCGGATTTAACATTTATAGAGATGTTTGACATCCTAACTCTTAGGCAGTGTCTCTACAGCATCATCTACCAGTACCAAGGTGCTTCAAAGAAGCGCAGGTTGATGTATCAAGGTGAGACTACGCAGAAACCTCCCCGTTTGACATCGTTTTAG 612 0.415 MGLIVEVETVDENDDVLIPPPNFSMVEDCIYRSSLPQPPNFPFLQTLNLRSIIFLCPEPYPEENLEFLKSQNIRLFQFGIEGKTEVSLPILRDSIMEALKVLLDVRNHPVLIHCKRGKHRTGCLVGCFRKIQNWCLSSVFEEYQLYAGAKSRTADLTFIEMFDILTLRQCLYSIIYQYQGASKKRRLMYQGETTQKPPRLTSF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01632 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
Vifa5g01632 203 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 173 IPR020422 GO:0006470|GO:0008138
Vifa5g01632 203 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
Vifa5g01632 203 CDD PFA-DSP_Siw14 17 163 - -
Vifa5g01632 203 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Vifa5g01632 203 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
Vifa5g01632 203 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Vifa5g01632 203 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Vifa5g01632 203 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Vifa5g01632 203 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Vifa5g01632 203 Gene3D Protein tyrosine phosphatase superfamily 16 165 IPR029021 -
Vifa5g01632 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 15 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01632 Vifa-Chr5 480358034 480359559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01632 7 197 Protein tyrosine phosphatase (PTP) family AT3G02800 68.229 5.44e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01632 K18045 - gmx:100787713 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01632 5 480358034 480359559 Vifa5g01632 5 480358034 480359559 ECH