Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01628 ATGACACCGTCTCAAGAAAAACGCCACCATTCCATCTTTGAACTTCCCCCAAACTACTTCGACTCTTGTCGTCTTCTCCCTTCACCCCACTCTTCAGTTTCCGACCTCTACGCAAATCACGAAACCCTCCAATTACCCTCTAACGACGCCGTCGTTTTGGGCACTAGGTTAACCTGCAATACCTGTAAGGCTCAGTTCGATTCCCTTCAAGACCAACGTTCCCACTTCAAATCCGATATTCATCGTTTCAATGTGAAGCTGACAATTGCTGGGAAACATATTGTGAAAGAAGATGATTTTGAAGTTCTGACATCTGACTTTGTTAAAGACTATGATGTGTCAAGTATATCTGGATCAGAAAGTGATACCGATGACGACGATGATAGTGAAAATGAGGGTCGAGCTCGAAGTGTTGTGCGTCGTAAGTACGGTGAAAGCTTTAAACAGAAGCTGTTTGTTTGTCTTCAGACAGGGCAGAGAGTTTCTGTGTGGAAGTGTTTGATTATGAATGTGAGTGAGAATGTTGTGTATGAGGATGAACAAGTGCAGAAGAATTTGGGTGAGAGGTTGAAATCTCTGACTGTTGAGCCCAGGGATAATAGCCGTTTGAGGATTGTTTTGCTTGCGTCTGGTGGGCACTTTGCGGGATGTGTCTTTGATGGTGTAACGGTCGTGGCTCACAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGGAAAAAACAGTCTACAAATGATGCTTCTGGCAGGACTGCACATTCTGCTGGTGCTTCACTTCGTCGTTATAATGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTACTGCTTGGAGACCTTATTTTGATGCTTCTATTTGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTCCTTTATGACGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGCCAGAAATATTTCTATGATTGTCCGCAGGCCCACTCTCAGGGAAGCAAAACGTGTATATGGCCAGTTGACCCTAGTATCCTATGAAGCAGATGAGAAGGAAATTTTACAATGCAATCAACAGGACGCGGTGCCACCAATTCGTATTGCTAAAGGAAATGGCGCCCCACCTGCTAGCAAAGTGGACATGGCTGGATTGGATAAAAACAACAAAGCCAAAGCTGGTTCCAGTAACCAAAATGATGAACCTCTTATATCGAGTAACGACGAAAGTGAGAATGACCTATCTAGTAAGTCAACTCCTTTACATCAAGCAGCACAATCTGCTGACTCTCAAAAGGTTATGGAACTCCTGGAACAAGGCTTGGATCCATGCATCAAAGATGAAAGGGGGCAGACCCCGTATATGTTGGCACTTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCCTGACAAATGGGATTGGAATGCTGCAAAAGTGCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTGAAGAAATTAAGGAAGGCAAAAGAAAAGAAGGCTCAGAGAAGCTGCTCCACACATCCTACATCCGTTGACCCAGCAGCCGGTGACCCAACATCCAGTGATCCCAGCAACCGGCAACCTAGCATCTCGCGGCCGGTGGCCTGTTTCTTCTCTGTTTCTGGCGGCTTATTTCTGGCTGAAGCTGTTGAAAAACAAAAGATTCAAACATCTGCTACAGGACAATCACAGCCAAAAAGTGGTGTGAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAGGATGAAGAAAGAGAAAAGAGAGCAGCTGCTGCTGAAAGAAGAATGGCTGCCCTCAAAATCCAAGCTGATAATAGCATATCAGAGGCTAATAAAAGTGGATTAGCTGGTGACATAGTCTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAGAGAAATCCTAGAAGATGGATGA 2034 0.4381 MTPSQEKRHHSIFELPPNYFDSCRLLPSPHSSVSDLYANHETLQLPSNDAVVLGTRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKHIVKEDDFEVLTSDFVKDYDVSSISGSESDTDDDDDSENEGRARSVVRRKYGESFKQKLFVCLQTGQRVSVWKCLIMNVSENVVYEDEQVQKNLGERLKSLTVEPRDNSRLRIVLLASGGHFAGCVFDGVTVVAHKTFHRYVVRAKAGKKQSTNDASGRTAHSAGASLRRYNELALKKEVHELLTAWRPYFDASICIFIHAPSSSRQLLYDGEKPCFTNPQCARNISMIVRRPTLREAKRVYGQLTLVSYEADEKEILQCNQQDAVPPIRIAKGNGAPPASKVDMAGLDKNNKAKAGSSNQNDEPLISSNDESENDLSSKSTPLHQAAQSADSQKVMELLEQGLDPCIKDERGQTPYMLALDKEVRNTFRRFMASNPDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQRSCSTHPTSVDPAAGDPTSSDPSNRQPSISRPVACFFSVSGGLFLAEAVEKQKIQTSATGQSQPKSGVKLSKEEEMKRAQDEEREKRAAAAERRMAALKIQADNSISEANKSGLAGDIVCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDG 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01628 677 MobiDBLite consensus disorder prediction 382 425 - -
Vifa5g01628 677 MobiDBLite consensus disorder prediction 524 550 - -
Vifa5g01628 677 SUPERFAMILY Ankyrin repeat 412 468 IPR036770 -
Vifa5g01628 677 MobiDBLite consensus disorder prediction 115 135 - -
Vifa5g01628 677 MobiDBLite consensus disorder prediction 505 520 - -
Vifa5g01628 677 MobiDBLite consensus disorder prediction 490 504 - -
Vifa5g01628 677 MobiDBLite consensus disorder prediction 485 550 - -
Vifa5g01628 677 Coils Coil 487 518 - -
Vifa5g01628 677 ProSiteProfiles Ankyrin repeat region circular profile. 411 443 - -
Vifa5g01628 677 ProSitePatterns Zinc finger C2H2 type domain signature. 59 81 IPR013087 -
Vifa5g01628 677 MobiDBLite consensus disorder prediction 575 602 - -
Vifa5g01628 677 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 4 676 IPR047139 -
Vifa5g01628 677 Gene3D - 374 519 IPR036770 -
Vifa5g01628 677 ProSiteProfiles Ankyrin repeat profile. 411 443 IPR002110 GO:0005515
Vifa5g01628 677 MobiDBLite consensus disorder prediction 385 425 - -
Vifa5g01628 677 Pfam Bacteroidetes VLRF1 release factor 205 342 IPR041175 -
Vifa5g01628 677 Pfam Vms1-associating treble clef domain 641 672 IPR041540 -
Vifa5g01628 677 Coils Coil 590 629 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01628 7 516 C2H2 Transcription Factor Family AT1G01930 53.119 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01628 K26089 - gmx:100527709 809.29