Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01623 ATGGAATTCGATACCATCCCTCAAGAAGCAATGTGGCAAATGAACTTGAGATCAAGTGAAACGATGGAATCGGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAGAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACAGGAACTTGCAAATTTGGTGCCACGTGCAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGACTGAATGTGCTTATTATTTAAGAACGGGTCAGTGCAAGTTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAGTAATATGGTACTATCAATGAGGGGTTCGACTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAGCAGTCATATGCCACAGGAATTACAAATTGGTCTAGTTCATCCTATGTTCCTAGTCCAAGGTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAGTGGTCAAATGGGATCAGACAGTTCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGAATTAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGCTCCGTTCCAGTAGGATTCTATGCTTTGCAGAGGGATAACATCTTTCCAGAGAGACCTGATCAGCCCGAATGCCAATTCTACATGAAAACCGGAGATTGCAAGTTCGGTGCAGTTTGTCGTTTTCACCATCCACGAGAGAGGCAGATACCTGCTCCAGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTATTCTACTCACGGTATGGCATATGCAAATTCGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTATCCGCATCACCTTTAGCTGATGCCTCGGGACGGCGTCTGTTAGGCTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGGACAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCTATTCCTTCCAGTGATGATAACATTGATGACGAGGGATAA 1257 0.4519 MEFDTIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNETECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYATGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYSGQMGSDSSQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLADASGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPSSDDNIDDEG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01623 418 FunFam Zinc finger nuclease 2 29 106 - -
Vifa5g01623 418 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Vifa5g01623 418 Gene3D - 106 155 - -
Vifa5g01623 418 MobiDBLite consensus disorder prediction 384 418 - -
Vifa5g01623 418 MobiDBLite consensus disorder prediction 220 240 - -
Vifa5g01623 418 SUPERFAMILY CCCH zinc finger 79 104 IPR036855 GO:0046872
Vifa5g01623 418 ProSiteProfiles Zinc finger C3H1-type profile. 121 149 IPR000571 GO:0046872
Vifa5g01623 418 SUPERFAMILY CCCH zinc finger 122 149 IPR036855 GO:0046872
Vifa5g01623 418 ProSiteProfiles Zinc finger C3H1-type profile. 31 58 IPR000571 GO:0046872
Vifa5g01623 418 SUPERFAMILY CCCH zinc finger 327 351 IPR036855 GO:0046872
Vifa5g01623 418 Gene3D - 271 352 - -
Vifa5g01623 418 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Vifa5g01623 418 Gene3D - 29 105 - -
Vifa5g01623 418 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Vifa5g01623 418 SMART c3hfinal6 75 102 IPR000571 GO:0046872
Vifa5g01623 418 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Vifa5g01623 418 SMART c3hfinal6 121 148 IPR000571 GO:0046872
Vifa5g01623 418 SMART c3hfinal6 324 351 IPR000571 GO:0046872
Vifa5g01623 418 ProSiteProfiles Zinc finger C3H1-type profile. 324 352 IPR000571 GO:0046872
Vifa5g01623 418 ProSiteProfiles Zinc finger C3H1-type profile. 75 103 IPR000571 GO:0046872
Vifa5g01623 418 PANTHER PROTEIN PHOSPHATASE RELATED 11 371 - -
Vifa5g01623 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 102 IPR000571 GO:0046872
Vifa5g01623 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 57 IPR000571 GO:0046872
Vifa5g01623 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Vifa5g01623 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 351 IPR000571 GO:0046872
Vifa5g01623 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 148 IPR000571 GO:0046872
Vifa5g01623 418 SUPERFAMILY CCCH zinc finger 35 58 IPR036855 GO:0046872
Vifa5g01623 418 FunFam CCCH type zinc finger protein 276 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01623 Vifa-Chr5 467575827 467582314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01623 11 416 C2H2 Transcription Factor Family AT3G02830 62.319 5.95e-179 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g01623 zf-CCCH 5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01623 - - gmx:100786261 783.867