Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01622 ATGGAATTCGATACCATCCCTCAAGAAGCAATGTGGCAAATGAACTTGAGATCAAGTGAAACGATGGAATCGGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAGAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGACTGAATGTGCTTATTATTTAAGAACGGGTCAGTGCAAGTTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAGTAATATGGTACTATCAATGAGGGGTTCGACTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAGCAGTCATATGCCACAGGAATTACAAATTGGTCTAGTTCATCCTATGTTCCTAGTCCAAGGTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAGTGGTCAAATGGGATCAGACAGTTCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGAATTAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGCTCCGTTCCAGTAGGATTCTATGCTTTGCAGAGGGATAACATCTTTCCAGAGAGACCTGATCAGCCCGAATGCCAATTCTACATGAAAACCGGAGATTGCAAGTTCGGTGCAGTTTGTCGTTTTCACCATCCACGAGAGAGGCAGATACCTGCTCCAGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTATTCTACTCACGGTATGGCATATGCAAATTCGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTATCCGCATCACCTTTAGCTGATGCCTCGGGACGGCGTCTGTTAGGCTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGGACAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCTATTCCTTCCAGTGATGATAACATTGATGACGAGGGATAA 1191 0.4509 MEFDTIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERFHHPKDKAGVAGRVALNILGYPLRPNETECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYATGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYSGQMGSDSSQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLADASGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPSSDDNIDDEG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01622 396 ProSiteProfiles Zinc finger C3H1-type profile. 256 284 IPR000571 GO:0046872
Vifa5g01622 396 SUPERFAMILY CCCH zinc finger 305 329 IPR036855 GO:0046872
Vifa5g01622 396 Gene3D - 249 331 - -
Vifa5g01622 396 FunFam CCCH type zinc finger protein 254 339 - -
Vifa5g01622 396 PANTHER PROTEIN PHOSPHATASE RELATED 11 349 - -
Vifa5g01622 396 ProSiteProfiles Zinc finger C3H1-type profile. 31 58 IPR000571 GO:0046872
Vifa5g01622 396 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Vifa5g01622 396 SUPERFAMILY CCCH zinc finger 259 284 IPR036855 GO:0046872
Vifa5g01622 396 SUPERFAMILY CCCH zinc finger 35 58 IPR036855 GO:0046872
Vifa5g01622 396 MobiDBLite consensus disorder prediction 198 218 - -
Vifa5g01622 396 SUPERFAMILY CCCH zinc finger 100 127 IPR036855 GO:0046872
Vifa5g01622 396 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Vifa5g01622 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 283 IPR000571 GO:0046872
Vifa5g01622 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 57 IPR000571 GO:0046872
Vifa5g01622 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Vifa5g01622 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 126 IPR000571 GO:0046872
Vifa5g01622 396 MobiDBLite consensus disorder prediction 362 396 - -
Vifa5g01622 396 Gene3D - 28 138 - -
Vifa5g01622 396 SMART c3hfinal6 256 283 IPR000571 GO:0046872
Vifa5g01622 396 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Vifa5g01622 396 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Vifa5g01622 396 SMART c3hfinal6 99 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01622 Vifa-Chr5 467575827 467582314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01622 11 394 C2H2 Transcription Factor Family AT3G02830 57.971 7.40e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g01622 zf-CCCH 4.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01622 - - gmx:100786261 638.262