Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01621 ATGGAATTCGATACCATCCCTCAAGAAGCAATCATCCAGGAGAACCAGATTGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAGAGTACTATCTGAAAACAGGAACTTGCAAATTTGGTGCCACGTGCAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGACTGAATGTGCTTATTATTTAAGAACGGGTCAGTGCAAGTTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAGTAATATGGTACTATCAATGAGGGGTTCGACTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAGCAGTCATATGCCACAGGAATTACAAATTGGTCTAGTTCATCCTATGTTCCTAGTCCAAGGTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAGTGGTCAAATGGGATCAGACAGTTCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGAATTAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGCTCCGTTCCAGTAGGATTCTATGCTTTGCAGAGGGATAACATCTTTCCAGAGAGACCTGATCAGCCCGAATGCCAATTCTACATGAAAACCGGAGATTGCAAGTTCGGTGCAGTTTGTCGTTTTCACCATCCACGAGAGAGGCAGATACCTGCTCCAGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTATTCTACTCACGGTATGGCATATGCAAATTCGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTATCCGCATCACCTTTAGCTGATGCCTCGGGACGGCGTCTGTTAGGCTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGGACAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCTATTCCTTCCAGTGATGATAACATTGATGACGAGGGATAA 1110 0.4541 MEFDTIPQEAIIQENQIEAGYCHCTDERRVPREYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNETECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYATGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYSGQMGSDSSQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLADASGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPSSDDNIDDEG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01621 369 FunFam CCCH type zinc finger protein 227 312 - -
Vifa5g01621 369 Gene3D - 221 304 - -
Vifa5g01621 369 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
Vifa5g01621 369 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Vifa5g01621 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Vifa5g01621 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 99 IPR000571 GO:0046872
Vifa5g01621 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 256 IPR000571 GO:0046872
Vifa5g01621 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 34 53 IPR000571 GO:0046872
Vifa5g01621 369 Gene3D - 22 110 - -
Vifa5g01621 369 MobiDBLite consensus disorder prediction 171 191 - -
Vifa5g01621 369 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Vifa5g01621 369 SUPERFAMILY CCCH zinc finger 278 302 IPR036855 GO:0046872
Vifa5g01621 369 ProSiteProfiles Zinc finger C3H1-type profile. 229 257 IPR000571 GO:0046872
Vifa5g01621 369 SUPERFAMILY CCCH zinc finger 73 100 IPR036855 GO:0046872
Vifa5g01621 369 SUPERFAMILY CCCH zinc finger 232 257 IPR036855 GO:0046872
Vifa5g01621 369 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Vifa5g01621 369 SMART c3hfinal6 229 256 IPR000571 GO:0046872
Vifa5g01621 369 SMART c3hfinal6 26 53 IPR000571 GO:0046872
Vifa5g01621 369 SMART c3hfinal6 72 99 IPR000571 GO:0046872
Vifa5g01621 369 PANTHER PROTEIN PHOSPHATASE RELATED 33 322 - -
Vifa5g01621 369 MobiDBLite consensus disorder prediction 335 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01621 Vifa-Chr5 467575827 467582314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01621 33 367 C2H2 Transcription Factor Family AT3G02830 58.601 8.87e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g01621 zf-CCCH 4.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01621 - - gmx:100786261 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01621 5 467575827 467582314 Vifa5g01621 5 467575827 467582314 ECH