Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01620 ATGTCAGGCATGTACTTGTTTCTCAATCAGTGCATAAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGACTGAATGTGCTTATTATTTAAGAACGGGTCAGTGCAAGTTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAGTAATATGGTACTATCAATGAGGGGTTCGACTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAGCAGTCATATGCCACAGGAATTACAAATTGGTCTAGTTCATCCTATGTTCCTAGTCCAAGGTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAGTGGTCAAATGGGATCAGACAGTTCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGAATTAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGCTCCGTTCCAGTAGGATTCTATGCTTTGCAGAGGGATAACATCTTTCCAGAGAGACCTGATCAGCCCGAATGCCAATTCTACATGAAAACCGGAGATTGCAAGTTCGGTGCAGTTTGTCGTTTTCACCATCCACGAGAGAGGCAGATACCTGCTCCAGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTATTCTACTCACGGTATGGCATATGCAAATTCGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTATCCGCATCACCTTTAGCTGATGCCTCGGGACGGCGTCTGTTAGGCTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGGACAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCTATTCCTTCCAGTGATGATAACATTGATGACGAGGGATAA 1005 0.4488 MSGMYLFLNQCIRFHHPKDKAGVAGRVALNILGYPLRPNETECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYATGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYSGQMGSDSSQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLADASGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPSSDDNIDDEG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01620 334 Gene3D - 186 269 - -
Vifa5g01620 334 MobiDBLite consensus disorder prediction 136 156 - -
Vifa5g01620 334 SUPERFAMILY CCCH zinc finger 243 267 IPR036855 GO:0046872
Vifa5g01620 334 MobiDBLite consensus disorder prediction 300 334 - -
Vifa5g01620 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 221 IPR000571 GO:0046872
Vifa5g01620 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 64 IPR000571 GO:0046872
Vifa5g01620 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 267 IPR000571 GO:0046872
Vifa5g01620 334 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
Vifa5g01620 334 Gene3D - 7 76 - -
Vifa5g01620 334 SUPERFAMILY CCCH zinc finger 38 65 IPR036855 GO:0046872
Vifa5g01620 334 PANTHER PROTEIN PHOSPHATASE RELATED 13 287 - -
Vifa5g01620 334 SUPERFAMILY CCCH zinc finger 197 222 IPR036855 GO:0046872
Vifa5g01620 334 ProSiteProfiles Zinc finger C3H1-type profile. 194 222 IPR000571 GO:0046872
Vifa5g01620 334 SMART c3hfinal6 194 221 IPR000571 GO:0046872
Vifa5g01620 334 SMART c3hfinal6 240 267 IPR000571 GO:0046872
Vifa5g01620 334 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Vifa5g01620 334 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Vifa5g01620 334 FunFam CCCH type zinc finger protein 192 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01620 Vifa-Chr5 467575827 467580704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01620 34 74 C2H2 Transcription Factor Family AT3G02830 52.273 2.66e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g01620 zf-CCCH 3.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01620 - - gmx:100786261 592.038