Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01615 ATGGTTTCCCTCTCAACCAACCCTTTCTTTCGCCTCACTCCACACAAAAATATTCCCCCTTCTACTAGATTTCAACGCCCAAACAACAACGCCAATCCCCTCCATAACAACAACTATCAATGTAACAAAATTCGCAGAAATGTTGTTTGTGCTTGCATCGCTCCTCCACGTAATTTCAACTCCCAAGACTCTTCCGCCATTCAATTCAATGGTTCATCCAAATCAGAACAGCTAGACACAATTCGGGATCATGACGATGATTCTGATGTTCTTATTGAGTGTAGAGACGTATACAAGTCTTTCGGGGAAAAGAAAATCTTAAATGGTATCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCTTCTGGGACTGGCAAATCTACCATTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAGGGAGAAGTTTATATTCGAGGTAGAAAGAGAAGGGGTTTGATAAGTGACGATGAGATATCGGGTCTTCGGATTGGATTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTACGTGAAAATGTTGGTTTTCTCTTATATGAACACTCAAGCATGCCTGAGGAACAGATATCAGAGCTTGTCAAGGAAACCTTGGCTGCAGTTGGTTTAAAGGGAGTTGAAGAGCGGCTTCCTTCTGAGCTATCAGGCGGAATGAAAAAGCGGGTTGCTTTAGCTCGATCTATTATTTGTGACACAACAAAGGATTCAATAGAACCAGAGGTGCTCTTGTACGACGAACCAACTGCTGGACTTGATCCCATTGCATCTACAGTTGTTGAAGATCTGATTCGCTCTGTCCACATAAAAGGACGAGATGCACTTGGAAAACCTGGGAATATTACATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGGTTGTTGTTTTTACACAAGGGAAAGGTTGTTTGGGAAGGAATGACTCATGAATTTACTACCTCAACGAATCCAATTGTTGAGCAGTTCGCATCCGGGAGCCTAGATGGTCCTATCAAATATTAG 1059 0.4193 MVSLSTNPFFRLTPHKNIPPSTRFQRPNNNANPLHNNNYQCNKIRRNVVCACIAPPRNFNSQDSSAIQFNGSSKSEQLDTIRDHDDDSDVLIECRDVYKSFGEKKILNGISFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRRGLISDDEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMPEEQISELVKETLAAVGLKGVEERLPSELSGGMKKRVALARSIICDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNITSYVVVTHQHSTIKRAIDRLLFLHKGKVVWEGMTHEFTTSTNPIVEQFASGSLDGPIKY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01615 352 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 35 352 - -
Vifa5g01615 352 Pfam ABC transporter 107 262 IPR003439 GO:0005524
Vifa5g01615 352 ProSitePatterns ABC transporters family signature. 227 241 IPR017871 GO:0005524|GO:0016887
Vifa5g01615 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 333 IPR027417 -
Vifa5g01615 352 SMART AAA_5 116 320 IPR003593 GO:0016887
Vifa5g01615 352 Gene3D - 78 344 IPR027417 -
Vifa5g01615 352 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 343 IPR003439 GO:0005524
Vifa5g01615 352 CDD ABC_Org_Solvent_Resistant 92 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01615 Vifa-Chr5 466506209 466510234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01615 98 336 Calmodulin-binding Proteins AT2G36910 28.906 2.82e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01615 - - gmx:100789283 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01615 5 466506209 466510234 Vifa5g01615 5 466506209 466510234 ECH