LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g01595	ATGCCTTGGATCAAACTCATGGAGTTTCCTTACCTTTACATTCTCTCCACAACAATTCTTCTCTTATTTATGTTTCCTAATTCAATCTACTGTCAACAATTATACCTTAACACAACTGTCACTGATTGCTCAGACAACCCTTCAGCACCAAAAGGATACCTATGCAATGGCCCTCAAATGTCATCATGCGATTCATTCTTAGTTTTCAGGTCCAAACCTCCTTATGACAATCCTATAAATATTGCCAACCTTCTTAGTTCTGAAGCATCAACCGTAGCTTCAATTAACAACATCTCAAGAGATACCAAACTTCTTTCCAATAAAACAATCATTGTCCCTGTCCTTTGTTCATGTTCTGGAAATATCTACCAACATAACACCCCTTACACTGTCAAAAAAGGTGATACCTACTTTCAATTGGTGAATGAAACTTACCAAAGCCTCACAACATGTCAGGCTTTAAAGGGTCAGAATTACTATGCTTCTGTAAACATTACAATTGGTGCAGAGCTCACAATTCCACTGCTTTGTGCTTGTCCGACAACAAAACAGATGGCGAAAGGGATCACCTCCTTGCTGGTTTACACAGTGAACTACGGTGAAACTGTTGAATCTATAGCAGAGGCTTATGGTGTTGATGAACAAAGTATACTAGAAGCAAATGACTTGCAAGTGGCACCGAGTGAAAACAGAAGGGTGATCCTCTCTGCCTTGTATCCTATATTGGTTCCTCTTAGTGGCAAGAGTTGCAAAGAGGATCCTGATAGTTTCTATTGTACTTGCTCTCAAGGAAGGCTTGCAGATGGAAGGTGTAACGAATCTCATGGTCAAAATTTTCCTGCCAAATTGGTTGCTGCATTAGGGGTTGGAATTGGCGCAGCTTTTCTGATTTTGTTTCTTTTGGGTTACAAGTTATATCAATATATACAGAAAAGAAGAGGGAGTATTCGTAAGGAAAAGCTATTCAGACAAAATGGTGGTTACCTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGGAGAGGAGCTTCAAAGAGCAACCGATAACTACAGCCAGAGTAGGTTTCTCGGCCAGGGTGGCTACGGCACGGTGTACAAAGGAATGTTACCAGATGGAAGCATAGTAGCAATTAAAAAATCAAAACACCTTGACAGGAACCAAGTAGAAGCCTTTGTTAATGAAGTGGTCATCTTATCTCAAATCAACCACAGAAACATTGTTAAACTCTTAGGATGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATATATTAATAACGGAAATCTTTCCCAACATATACATAGGAGAGACAATGAATCACCCCTTTCGTGGGAAATTCGCCTTCGAATTGCGTGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCAGCTTCTATTCCAATCTTCCACAGAGACATCAAACCAACCAACATACTTCTAGACAGTAACTATAATGCCAAAGTGTCTGATTTTGGAACATCTAGAACAATTCCACTAGATAAGACTCATTTAACCACAGCTGTAGGAGGCACTTTTGGCTACATGGACCCTGAATATTTTCAGACCAGTCAATTTACAGATAAGAGTGATGTATATAGTTTCGGTGTTATTCTGGTAGAGATTATAACCGGTAGAATGCCAATAACATTCAATGATGAAGATGAGGGACAAAATATGACTGCACATTTCCTTTCGGCGATGAAAGACAACCAACTTTCTCATGTTGTAGACAACACAGTGCTTAAGGAAGCAAGAAAAGATGATATTCTTGCTATTGCAAATCTTGCAATGAGGTGTTTGAGACTTAATGGTAAGAAAAGACCAACAATGAAAGAGGTTTCAGCTGAGTTAGAAGCACTGAGAAAGGTACAAAGTTTTTTATATATCAATGATGATCACAGGAAACCAAGTGATGGACAATTATTTGAGCATTCAACTAATCACATATTTCGGGACTCCGTGGAAAGCTTTTCAGTATCTTCACAAATGGAGTCTACATCTTTCTAA	2040	0.3877	MPWIKLMEFPYLYILSTTILLLFMFPNSIYCQQLYLNTTVTDCSDNPSAPKGYLCNGPQMSSCDSFLVFRSKPPYDNPINIANLLSSEASTVASINNISRDTKLLSNKTIIVPVLCSCSGNIYQHNTPYTVKKGDTYFQLVNETYQSLTTCQALKGQNYYASVNITIGAELTIPLLCACPTTKQMAKGITSLLVYTVNYGETVESIAEAYGVDEQSILEANDLQVAPSENRRVILSALYPILVPLSGKSCKEDPDSFYCTCSQGRLADGRCNESHGQNFPAKLVAALGVGIGAAFLILFLLGYKLYQYIQKRRGSIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTGEELQRATDNYSQSRFLGQGGYGTVYKGMLPDGSIVAIKKSKHLDRNQVEAFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYINNGNLSQHIHRRDNESPLSWEIRLRIACEVAGAVAYMHFSASIPIFHRDIKPTNILLDSNYNAKVSDFGTSRTIPLDKTHLTTAVGGTFGYMDPEYFQTSQFTDKSDVYSFGVILVEIITGRMPITFNDEDEGQNMTAHFLSAMKDNQLSHVVDNTVLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKVQSFLYINDDHRKPSDGQLFEHSTNHIFRDSVESFSVSSQMESTSF	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g01595	679	ProSiteProfiles	LysM domain profile.	193	240	IPR018392	-
	Vifa5g01595	679	ProSiteProfiles	Protein kinase domain profile.	358	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g01595	679	SMART	serkin_6	358	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g01595	679	SMART	LysM_2	128	174	IPR018392	-
	Vifa5g01595	679	SMART	LysM_2	194	236	IPR018392	-
	Vifa5g01595	679	Gene3D	Transferase(Phosphotransferase) domain 1	434	647	-	-
	Vifa5g01595	679	Gene3D	Phosphorylase Kinase; domain 1	331	433	-	-
	Vifa5g01595	679	SUPERFAMILY	Protein kinase-like (PK-like)	341	628	IPR011009	-
	Vifa5g01595	679	Pfam	Protein kinase domain	358	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g01595	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Vifa5g01595	679	CDD	LysM	194	223	IPR018392	-
	Vifa5g01595	679	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	106	635	IPR045274	GO:0007166
	Vifa5g01595	679	ProSitePatterns	Protein kinases ATP-binding region signature.	364	387	IPR017441	GO:0005524
	Vifa5g01595	679	FunFam	Wall-associated receptor kinase 2	329	433	-	-
	Vifa5g01595	679	CDD	STKc_IRAK	364	631	-	-
	Vifa5g01595	679	FunFam	Wall-associated receptor kinase 2	434	649	-	-
	Vifa5g01595	679	Pfam	LysM domain	129	174	IPR018392	-
	Vifa5g01595	679	Pfam	LysM domain	195	224	IPR018392	-
	Vifa5g01595	679	Gene3D	LysM domain	180	249	IPR036779	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g01595	Vifa-Chr5	465308549	465310674	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g01595	288	632	Receptor kinase-like Gene Family	AT1G16130	56.647	1.61e-141	429

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Vifa5g01595		Pkinase	8.6e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g01595	-		-	gmx:100792803	978.393