Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01594 ATGGAGCTTCAGTATTTCTACATTCTTCATCTCACTGTTATGTTCCTAAATATGTTTCCTCAGTTACTAACCTGCCAACAAGAATATCTCAATAGCACTGTCTTTGACTGCACTAACAACCCTTCTGTACCAAAAGGATACCTCTGCAATGGCCTTAAAAAGTCATGCACTTCCTTTTTAGTTTTCAAGTCAAAACCTCCCCACAACAACCCTGCAAGAATTTCCAACCTTCTTGGCTCTGAAGCATCTACCATAGCCTCGATCAACAAGATATCGATTAATGAGAAGATTCCTTCGAATAAATCAATCATTGTCCCGGTTTTCTGTTCATGTGCTGGAAATATCTACCAGCATAGCACATCTTACTCTGTCAAGCAGAATGACACCTATTATGAGTTGGTAAAAGAAACTTATCAAGGCCTTACAACCTGCCAGGCATTGATGGGTCAGAATTACTATGCTCCTGTTAACATTGCAATTGGTGCTGAGCTTACAGTTCCGGTACTATGTGCTTGTCCAACGAAAAACCTGACGGCAAAAGGGGTTACCTCCTTGCTAGTTCACATGGTGAACTATGGTGACACAGTTAAATCCATAGGAGAAGCTTATGGTGTTGATGAACCTAGCATGCGAGAGGCCAATGAGTTTCCAGTGCTACAAAGTGCAAACAGCACTGTCGTCCTCTTTGCTTCGACGCCTATAGTAGTTCCTCTGAGAAGTATGAGCTGCAAAGAGAACCCAGAGAGATTCTATTGCAAATGTTTTGAGGAACTGCACGCTGATGGAAGCTCCAAGGGTGTTTTCTGTGATGAATCTCATCGTCAAAAAATCCCTGCAAAATTGGTTGCTGCCTCAGGTATTGGAATTGGTACAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGATTATATCAATGCATAACGATAAAGAGAGAAAGAATCCGAAAGGAAAGGCTGTTCTGTCAAAATGGTGGCTACTTGTTACAAGAGAAGTTATCATCCTATGGAAACGGAGAAATGGCAAAGCTTTTTAATGCAGAGGAGCTGCAAAGAGCAACGGATAACTATAACCGAAGTCGGTTTCTGGGCCAGGGAGGCTATGGCACAGTGTACAAAGGAATGTTACCCGATGGAACGATAGTAGCAGTTAAAAAGTCGAAACAGCTTGACAGGAACCAGATAGAAACTTTTGTCAATGAAGTAGTCATCTTATCTAACATCAACCACAGGAACATTGTCAAACTCTTAGGTTGTTGTCTTGAGACAGAAACCCCAATACTTGTTTACGAATTTATCCCGAACGGAACTCTTTCCCAACATATACATAGGAAAGACCGTGATTCATCCCTTTCATGGGAAAGTCGACTTAGAATTGCTTGTGAAGTTGCTGGAGCAGTGTCATATATGCATTTTTCAGCTTCTATTCCAATCTTCCATAGAGACATCAAACCTACCAACATACTCTTAGACAGTAACTATAGTGCCAAAGTGTCTGATTTCGGGACATCAAGATCAATACCATTGGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTTTGGGTATATAGACCCTGAATATTTTCAGTCCAGTCAATTTACAGATAAGAGTGATGTATATAGTTTCGGTGTTGTTCTTGTAGAGATTATAACCGGAAGAAAGCCCAATTCATTCTATGATGAAGATGAGGGTCAAAACATGATTGCACAATTCATTTCTGTAACGAAAGAGAACAAACTTTCTCAAATAGTAGATTCCAGAGTGCAAAAGGAAGCAGGGAAAGACACCATTCTTACTATTTCGAATCTCGCAATCAGATGCTTGAGACTTAATCATAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAGTTAGAAACACTGAGAAAGGCACAAAGTTCCTTTCAAATCAACCATGATCACGATGAATCATCAAGTGATGATGAACAATCATTTGGGCACACAATCAATGAAACAACAGACCAAGAATCCAGAGACGAAAGCATTTCACTTTCCTTACAAATAGAATCCACGTCCTTCTGA 2046 0.4022 MELQYFYILHLTVMFLNMFPQLLTCQQEYLNSTVFDCTNNPSVPKGYLCNGLKKSCTSFLVFKSKPPHNNPARISNLLGSEASTIASINKISINEKIPSNKSIIVPVFCSCAGNIYQHSTSYSVKQNDTYYELVKETYQGLTTCQALMGQNYYAPVNIAIGAELTVPVLCACPTKNLTAKGVTSLLVHMVNYGDTVKSIGEAYGVDEPSMREANEFPVLQSANSTVVLFASTPIVVPLRSMSCKENPERFYCKCFEELHADGSSKGVFCDESHRQKIPAKLVAASGIGIGTGFLCLFLLGYRLYQCITIKRERIRKERLFCQNGGYLLQEKLSSYGNGEMAKLFNAEELQRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKKSKQLDRNQIETFVNEVVILSNINHRNIVKLLGCCLETETPILVYEFIPNGTLSQHIHRKDRDSSLSWESRLRIACEVAGAVSYMHFSASIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSIPLDKTHLTTFVGGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVEIITGRKPNSFYDEDEGQNMIAQFISVTKENKLSQIVDSRVQKEAGKDTILTISNLAIRCLRLNHKKRPTMKEVSAELETLRKAQSSFQINHDHDESSSDDEQSFGHTINETTDQESRDESISLSLQIESTSF 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01594 681 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01594 681 CDD STKc_IRAK 362 629 - -
Vifa5g01594 681 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Vifa5g01594 681 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Vifa5g01594 681 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01594 681 MobiDBLite consensus disorder prediction 667 681 - -
Vifa5g01594 681 Gene3D Transferase(Phosphotransferase) domain 1 432 654 - -
Vifa5g01594 681 MobiDBLite consensus disorder prediction 637 681 - -
Vifa5g01594 681 SUPERFAMILY Protein kinase-like (PK-like) 340 626 IPR011009 -
Vifa5g01594 681 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 144 637 IPR045274 GO:0007166
Vifa5g01594 681 FunFam Wall-associated receptor kinase 2 432 649 - -
Vifa5g01594 681 Pfam LysM domain 188 237 IPR018392 -
Vifa5g01594 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vifa5g01594 681 FunFam Wall-associated receptor kinase 2 327 431 - -
Vifa5g01594 681 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01594 Vifa-Chr5 465298963 465301179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01594 286 633 Receptor kinase-like Gene Family AT1G16130 57.143 3.18e-139 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa5g01594 Pkinase 7.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01594 - - gmx:100795455 1017.3