Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01593 ATGGACGTTCATTTTCTGTTTTCACTTCTTCTCATTGCACCTTGCTTTCTATTAACCTTTCATGCCCGTGCTGAGATAACTTCCACATATATAATCCATATGAACAAATCCCTCTTTCCTCAAATCTTCACTACTCATCATGATTGGTTCAAATCCACCATTCATTCCTTAAAATCAAAAACATTACTACTTGATGATCATGAGCAAGATCAATCTCAGAAGACACTAGTGTACACCTATGATAATGCCATGTATGGCTTTAGTGCTGTTTTATCTTCAAAGGAGCTAGAGAGTCTTAAAAACATTGATGGCTTTGTTGCAGCATATCAAGATAGAACAGTCACCATTGACACAACTCATACCTTTGAGTTTCTGAACCTAGATTCTCCGAATGGACTATGGCATGCTTCGAATTTCGGTGAGGATATAATTGTTGGTGTTATTGATTCTGGTGTGTGGCCTGAGAGTCAAAGCTTTCGAGATGATGGCATGACAAAGAAAATTCCAAGCAAATGGAAAGGAACGTGTGAAATTGGTCAAGAGTTCAATGCTTCCATGTGCAACTTCAAGTTGATTGGAGCTAGATATTTCAACAAAGGAGTCATTGCTTCAAATTCAAATGTTACAATCTTCATGAACTCGGCTAGAGACGTTGCAGGACATGGAACTCACACATCATCAACTGTTGCAGGTAACTATGTTAATGAAGCTTCTTATTTTGGCTATGCTAAAGGAATAGCTAGAGGCATTGCACCAAAAGCTAGGCTGGCTATGTATAAAACCAATTGGCCAGAAGGTCGTTTGGCTTCCGATGTTCTAGCTGGAATGGATCAAGCAATTGTTGATGGTGTTGATGTGATTTCAATTTCCATGGGATTCGATGATGTTCCGCTGTACGAAGATCCTATAGCAATAGCTTCATTTGCAGCTATGGAGAAAGGGATTGTTGTTTCGTCTTCTGCAGGTAATTTAGGACCTAATCTTGGAACATTGCACAATGGTATCCCTTGGCTAATTACAGTGGCTGCAGGAACAATAGACAGAACTTTTGGAACTCTTGTTTTGGGAAATGGACAAAACATCATTGGTTGGACTTTGTTTCCTGCAAATGCTATAGTGGAAAATCTTCCACTTGTTTACAATAAAACTTTATCTTCATGCAACTCAGAAAACTTGTTATCTCAAGTTAACAAACAAGTAGTACTTTTTTGCGACGACGAATCAATGACAAACCCAACATCAGTGTTTCATCAAATCAATACTGTTGCAACAGCAAGTGTGTTAGGAGCAGTTTTTGTTTCTGAAAATCCTAATTTAATTGACTTAGCAAATATTTACTCTCCAATTATCGTAATCAAGCCAAAAGACGCAGAATCCGTGATCAACTATGCAAAAACACATCAAAAGCCAACGGCAAGCATTAGGTTTCAAGAAACATATGTCGGAATAAAGCCAGCACCAACTGCAGCACAATACTCTTCAAGAGGTCCTTCACATAGCTTTCCATGGATTTTGAAGCCTGACATAATGGCACCTGGCTCTAGAATTCTCGCTGCTTATGTACCTCGTTCAGCATCAGGTAGAATTAGCTCAAACGTGTTCTTATCAAGTGACTACAATTTCATGTCAGGAACATCCATGGCTTGCCCTCATGTTTCCGGCGTTGCTGCTCTTCTAAAATCCGCACATCCACAATGGAGTGCTGCTGCTATAAGATCTGCATTAATAACCACAGCAAATCCTATGGATAACACACAAAGTCCTATAAAGGAAAACGGTTACCCTTCTCAACAAGCTTCTCCTCTCGCTATCGGAGCTGGCGAGATTGATCCTAATAGAGCAATGAATCCAGGTTTGATATACGATGTTACACCACAGGACTATGTTAATCTTCTTTGTGGTTTAAACTTCACAAAGAACCAAATTTCAACAATTACAAGATCAAGTTCTTATGATTGTGAAAACCCTTGTTTGGATCTTAATTACCCTTCATTTATAGCTTTTTACAGTAACACAACAAGATCAATGGTTCACAAATTTAAGAGGATAGTTACGAATGTCGGTGATGGTGCTGCTACATATAAAGCTAAAGTGACACATCCAAAAGGCTGTTTGGTGACAGTGTCACCTGATATATTAAGTTTCAGTTATAGAAATGAGAAACAAAGATACCACATCGTCATAAAGTGTGTAATGTACAAGAAGGAAAATGTTTCATTTGGGGATCTTGTTTGGGCTGAAGATGGTGGAACACACACAGTTAGAAGTCCTATTTTAGTGGCACCGAGTGGGATTGTATGA 2301 0.3881 MDVHFLFSLLLIAPCFLLTFHARAEITSTYIIHMNKSLFPQIFTTHHDWFKSTIHSLKSKTLLLDDHEQDQSQKTLVYTYDNAMYGFSAVLSSKELESLKNIDGFVAAYQDRTVTIDTTHTFEFLNLDSPNGLWHASNFGEDIIVGVIDSGVWPESQSFRDDGMTKKIPSKWKGTCEIGQEFNASMCNFKLIGARYFNKGVIASNSNVTIFMNSARDVAGHGTHTSSTVAGNYVNEASYFGYAKGIARGIAPKARLAMYKTNWPEGRLASDVLAGMDQAIVDGVDVISISMGFDDVPLYEDPIAIASFAAMEKGIVVSSSAGNLGPNLGTLHNGIPWLITVAAGTIDRTFGTLVLGNGQNIIGWTLFPANAIVENLPLVYNKTLSSCNSENLLSQVNKQVVLFCDDESMTNPTSVFHQINTVATASVLGAVFVSENPNLIDLANIYSPIIVIKPKDAESVINYAKTHQKPTASIRFQETYVGIKPAPTAAQYSSRGPSHSFPWILKPDIMAPGSRILAAYVPRSASGRISSNVFLSSDYNFMSGTSMACPHVSGVAALLKSAHPQWSAAAIRSALITTANPMDNTQSPIKENGYPSQQASPLAIGAGEIDPNRAMNPGLIYDVTPQDYVNLLCGLNFTKNQISTITRSSSYDCENPCLDLNYPSFIAFYSNTTRSMVHKFKRIVTNVGDGAATYKAKVTHPKGCLVTVSPDILSFSYRNEKQRYHIVIKCVMYKKENVSFGDLVWAEDGGTHTVRSPILVAPSGIV 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01593 766 SUPERFAMILY Subtilisin-like 117 619 IPR036852 GO:0004252|GO:0006508
Vifa5g01593 766 Gene3D Peptidase S8/S53 domain 142 628 IPR036852 GO:0004252|GO:0006508
Vifa5g01593 766 CDD PA_subtilisin_like 352 474 - -
Vifa5g01593 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 116 IPR037045 -
Vifa5g01593 766 ProSiteProfiles Serine proteases, subtilase domain profile. 121 615 - -
Vifa5g01593 766 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Vifa5g01593 766 Pfam Subtilase family 140 585 IPR000209 GO:0006508|GO:0008236
Vifa5g01593 766 Gene3D - 632 762 - -
Vifa5g01593 766 Pfam Fibronectin type-III domain 659 760 IPR041469 -
Vifa5g01593 766 FunFam Subtilisin-like protease SBT1.9 19 117 - -
Vifa5g01593 766 FunFam Subtilisin-like protease SBT1.5 142 356 - -
Vifa5g01593 766 Gene3D - 347 481 - -
Vifa5g01593 766 CDD Peptidases_S8_3 114 580 IPR034197 -
Vifa5g01593 766 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 759 IPR045051 -
Vifa5g01593 766 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Vifa5g01593 766 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Vifa5g01593 766 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Vifa5g01593 766 Pfam Peptidase inhibitor I9 29 116 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01593 Vifa-Chr5 465198777 465201077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01593 27 748 Subtilisin-like Serine Gene Family AT5G67090 42.005 4.62e-180 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01593 - - gmx:100779169 1112.44