Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01592 ATGGAACAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACCGTCACTTCCACCACCAACACACCAACCCCTTCTATTTCCTCCTCTCTTTTCCCCCTCCACCCCGAACCTTCTTGTACCTTCTCCTCTATATTTACCACCGAACAAAAACCTCAAACTTTCTCACTTTCCACACACCCTTTTGAACCAAGAACCTCCATTGAAGAGTTGCATGAACTTTGCAAGCCTTTCATTTCTAGATCAGACCCTCTTTCTTTGCAAACTTCTCCTCTGTTTTCTTCATTCTCTTATTCCTCATTAGCACCCAAATTACCTCTAACACAAGACAAACAACAACACAGAACTAAACAACAACACCAAGGTGATTCTCTCACCAACTCAAGATCAAAAAGAAGGAAAAACCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGTCTCTCTTCAGACATATGGGCATGGAGAAAATACGGACAAAAACCCATTAAAGGCTCACCATATCCAAGGGGTTATTATAGATGTAGCAGTTCAAAAGGTTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGATCAGATCCAACAATGTTCATAGTGACATATACATCTGAACACAACCATCCTGCTCCTACTCACAAAAACTCTCTTGCTGGTTCATCTCGCCAGAAGCCATTAACGCCACCTCAACCTGAAGGTGAAACAACCAACAAAGATGTAGCAAAAGCCTCTTCTCCTGCTACTACTAGCACTACTACCTCAGGACCTGAAGAAGAAGAGGTTCAGAATCAAGGAGAAAAGTCTGAGAGCAAGGAGGATTCTTTGATGGATGATGAAGATGTAGATGAGTTTGGCTTATCTGATGTTGTTTTGAGTGATAACTTCTTTGACAGTTTAGATGAACTGAGTCAACTCGGTGGTTCTGGAGATTGTTTCACAGATCCATTTTCTTCTGGTATAGGGATACCTAATTGGGCTGCTGCTACGGCTGCAGGTGGTAGCTGA 1005 0.4219 MEQDWDLHAVVRGCSTVTSTTNTPTPSISSSLFPLHPEPSCTFSSIFTTEQKPQTFSLSTHPFEPRTSIEELHELCKPFISRSDPLSLQTSPLFSSFSYSSLAPKLPLTQDKQQHRTKQQHQGDSLTNSRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTSEHNHPAPTHKNSLAGSSRQKPLTPPQPEGETTNKDVAKASSPATTSTTTSGPEEEEVQNQGEKSESKEDSLMDDEDVDEFGLSDVVLSDNFFDSLDELSQLGGSGDCFTDPFSSGIGIPNWAAATAAGGS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01592 334 MobiDBLite consensus disorder prediction 109 141 - -
Vifa5g01592 334 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01592 334 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01592 334 Gene3D WRKY domain 134 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01592 334 MobiDBLite consensus disorder prediction 205 259 - -
Vifa5g01592 334 MobiDBLite consensus disorder prediction 260 274 - -
Vifa5g01592 334 MobiDBLite consensus disorder prediction 205 284 - -
Vifa5g01592 334 FunFam WRKY transcription factor 22 134 204 - -
Vifa5g01592 334 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 305 IPR044810 GO:0003700
Vifa5g01592 334 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01592 334 SUPERFAMILY WRKY DNA-binding domain 149 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01592 Vifa-Chr5 464404648 464405828 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01592 1 333 WRKY Transcription Factor Family AT4G01250 45.507 3.48e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01592 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01592 K13425 - gmx:100170675 397.127