Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01589 ATGGAAAGCCAAAATCCACCTCCTCAAAACAACACTTCTATCCCCTTCTTCTTTACTCCTTCTTTACCAAATTACCCTTTGGAATCTCAAGATCAAGGACTAATTGGTGATATTGACTCATGGGGCAACTTTTTCTTAGGACAAAGTAACAACACTTTGCTTGTTGAGGATGCTAAGGAGACTTTTTTAATGGATAATATTCAACAATGCACTTCTTCTTCTAATATGGTGAATATTATTAATGAAAGTGGGAGTTATCAACTACATGAAGGAGAAGAAAAGCGAAACAAGTTAGAGGAGAAAAGGGTTAAAAGTGGGAGAGTGAAGAAGCCAACAAAGGTACCAAGGTTTGCATTTCAGACAAGAAGTGTTGATGATATTTTGGATGATGGATATCGTTGGAGGAAATATGGACAAAAAGCTGTCAAGAACACAACATACCCCAGAAGCTACTATCGATGCACGCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGTTATCCAAAGATACTAGCATTGTGGTGACTACGTACGAGGGAATTCACAACCACCCATGCGAGAAGCTTATGGAAACCCTAACTCCTCTTATAAAGCAAATTCAATTTCTTGCTAGTTTGTAA 624 0.3814 MESQNPPPQNNTSIPFFFTPSLPNYPLESQDQGLIGDIDSWGNFFLGQSNNTLLVEDAKETFLMDNIQQCTSSSNMVNIINESGSYQLHEGEEKRNKLEEKRVKSGRVKKPTKVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNTTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLIKQIQFLASL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01589 207 Gene3D WRKY domain 113 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01589 207 SMART WRKY_cls 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01589 207 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 189 IPR044810 GO:0003700
Vifa5g01589 207 Pfam WRKY DNA -binding domain 129 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01589 207 FunFam WRKY transcription factor 57 114 188 - -
Vifa5g01589 207 ProSiteProfiles WRKY domain profile. 123 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01589 207 SUPERFAMILY WRKY DNA-binding domain 122 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01589 Vifa-Chr5 463508048 463509046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01589 93 207 WRKY Transcription Factor Family AT5G41570 69.565 1.39e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01589 WRKY 5.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01589 - - cam:101497701 294.664