Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01584 ATGTCCTCTCCTCACAGTTACTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATTACCCTAGCTTTCCTCGTCCTCCTCGCCACTCTCTTCCTCTCTTTCTACCTCTGTTGCCGCACCAACCACAACAACAATAACAATAACCCAAACAACAACAACAATGCAGAAGGTATCGTTTTGTCGCGTGACATCTTCATATCTGAAACCGATGAAGAAAACCAACTTGGCGAAGAGAACACTGTGGTCGGTCTAGAAGACAACGTCATAAATTCGTATCCGAGGTTTCAGTTCAGCAGAAGCAACGCAACTGTATTAGGACAAAACACAACGTGTTCTATTTGTTTGTGTGAGTATAAGGATTCAGAGATGGTGAGGATGATGCCGGAATGTCGTCATTATTTTCATCTCTGCTGTCTCGATTCGTGGCTGAAGCTTAACGGTTCTTGTCCCGTTTGTCGAAACTCCCCGCTTCCAACGCCGCTAGCTACTCCGCTTCAAGAGGTTGTTCCACTATCTCAGTACGGTGCTGATCGGAGAAGAAGAAGGTGA 549 0.4645 MSSPHSYFTNLGLGYSIAITLAFLVLLATLFLSFYLCCRTNHNNNNNNPNNNNNAEGIVLSRDIFISETDEENQLGEENTVVGLEDNVINSYPRFQFSRSNATVLGQNTTCSICLCEYKDSEMVRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLATPLQEVVPLSQYGADRRRRR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01584 182 PANTHER RING-H2 FINGER PROTEIN ATL67 5 181 IPR044289 GO:0016567|GO:0016740
Vifa5g01584 182 Pfam Ring finger domain 110 153 IPR001841 -
Vifa5g01584 182 SUPERFAMILY RING/U-box 104 158 - -
Vifa5g01584 182 SMART ring_2 111 152 IPR001841 -
Vifa5g01584 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 157 IPR013083 -
Vifa5g01584 182 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01584 Vifa-Chr5 461387570 461388118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01584 1 172 C3H Transcription Factor Family AT5G07040 37.791 9.21e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01584 - - lja:Lj1g3v2807930.1 256.144