Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01583 ATGAACACCATACAAGAATTAGACATTTTCACAAGGTTGTTTCTTCTATTAATCTTTCTAGCCCTATTCATTCGAGTTTGTTACGTTTATTTTTCGTTACGCAGTGATCAACGCATTCAAGATCCAAATTTCAACCTAACACCGATACAACATTCTCGCGCCGATGAAAAAAGCACCGTGATAGGGCTCTCTAGGAGTGTCATCAATTCTTACCACACATTTCCTTTCAATAAAAACCACATTGCGACTATTAATAAGGATAGCGATTACGACACCATTTGTTCTATATGTATTTCGGATTACAAGGAGCAAGAGATTTTGAAGATGATGCCGCAATGTCGCCATTATTTTCATCGAAATTGTGTTGATACATGGTTGAAGGTTAATGCTTCGTGCCCAATTTGTAGAAATTCGCTATTACAAGGAAATGATGGTGATGTATCAAACTTAGAAGCTGTCTAA 462 0.368 MNTIQELDIFTRLFLLLIFLALFIRVCYVYFSLRSDQRIQDPNFNLTPIQHSRADEKSTVIGLSRSVINSYHTFPFNKNHIATINKDSDYDTICSICISDYKEQEILKMMPQCRHYFHRNCVDTWLKVNASCPICRNSLLQGNDGDVSNLEAV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01583 153 PANTHER RING-H2 FINGER PROTEIN ATL67 51 141 IPR044289 GO:0016567|GO:0016740
Vifa5g01583 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 141 IPR013083 -
Vifa5g01583 153 SUPERFAMILY RING/U-box 81 140 - -
Vifa5g01583 153 SMART ring_2 94 135 IPR001841 -
Vifa5g01583 153 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Vifa5g01583 153 Pfam Ring finger domain 93 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01583 Vifa-Chr5 460628095 460628556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01583 40 140 C3H Transcription Factor Family AT5G06490 35.780 1.47e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01583 - - ccaj:109814695 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01583 5 460628095 460628556 Vifa5g01583 5 460628095 460628556 ECH