Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01575 ATGGCTACAGCTCCTTCGCTTCTCCACTCCTCCGGCTCCTCTTTCCTCGCTCAATTTCGAACTCTTCCAACCCAATTTTCTTCTTCTTCATTGTTTTCCCATGGTAACAACCGCCACGGAAGTGCAGTGCTGTCCGTGAAGGCCACGGTTTCTGGGGTTGTGTTGGTGGGGAAGTCTGAAGCAGAGAAGGTTTATAGACTCAAAACAACTTACAATGAGAAAATTGTTCCTTTGCTCACGGAAGAGTTCTCTTACACCAATATTCATCAGGTGCCTAAAGTTGATAAGATTGTGGTGAACTGTGGTATTGGAGAAGCTGCACAGAATGCAAAAGGTTTGGATGCGGCGATTAATGATCTAGCACTTATCACCGGACAGAGACCTGTTAAGACTAGGGCGCGAATAGCTGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGAATTGCTGTGACACTCCGAGGAAAAATAATGTACTCATTTCTAGACCGCGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATTTAAGCAGCTTTGATGGGAATGGGAATTACAACATTGGTATTCAGGACCAAACCGTGTTCCCCGAGCTGAAATCTGCTATTGGTACACCTAGAGGAATGGATGTATGCATCTCAACAACTGCTAAAACTGATCAAGAAGGACAGAAATTACTAGCTCTCATGGGCATGCCCTTCAAAGAGGGAGTTGAAGTTACTCAAATAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATGCAAAATCAAAGGGTAGAGGAGATAGAGCAAAGAAGTAG 819 0.4383 MATAPSLLHSSGSSFLAQFRTLPTQFSSSSLFSHGNNRHGSAVLSVKATVSGVVLVGKSEAEKVYRLKTTYNEKIVPLLTEEFSYTNIHQVPKVDKIVVNCGIGEAAQNAKGLDAAINDLALITGQRPVKTRARIAVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNLSSFDGNGNYNIGIQDQTVFPELKSAIGTPRGMDVCISTTAKTDQEGQKLLALMGMPFKEGVEVTQIVRKKKLKSHHFDAKSKGRGDRAKK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01575 272 Pfam Ribosomal protein L5 87 143 IPR031310 -
Vifa5g01575 272 Hamap 50S ribosomal protein L5 [rplE]. 64 241 IPR020930 GO:0003735|GO:0005840|GO:0006412
Vifa5g01575 272 ProSitePatterns Ribosomal protein L5 signature. 120 136 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vifa5g01575 272 Pfam ribosomal L5P family C-terminus 147 239 IPR031309 -
Vifa5g01575 272 FunFam 50S ribosomal protein L5 62 241 - -
Vifa5g01575 272 SUPERFAMILY RL5-like 66 240 IPR022803 -
Vifa5g01575 272 Gene3D - 58 241 IPR022803 -
Vifa5g01575 272 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 68 244 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01575 93 198 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 31.132 8.12e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01575 K02931 - gmx:100818896 410.223