Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01573 ATGTCGATCTTCGACGGAGCTTTCATCAACACACAGCTCTCGAAACACACATCGATCTTCGGTCTCCGTTTATGGGTTGTCATCGGAATCTTAATAGGCGTCGCCATCGTTTTCATCCTCTTCCTCATCTCCCTCTGTGTAGTTTCCCGCCGCCGCAACCACCGCCGTACTGGCGACTACAAAATCCCCGGCGCCACTCCTGCTAAGGAAATCCAACAGATCGTACACATTCCAGGTCCCCACATGCTCCGGCGACCAGCTCCGGCGAATGTACCGGAGATCCACGTGGACATCGGGAGGCAAGAACACAGAGTGGTGGTTAAATCGGATAAAGTTTCAAGTGGTGAGAGTAGAGGAACAGCGGGAAGTGGGTGTGATACGACGTCGTCTTTTGGGAGTGGAAGTGTCGGTGGAATTGGACCTGAGGTATCACATCTTGGTTGGGGAAGATGGTACACTCTGAGAGAGCTTGAAGATGCTACTGGTGGGTTGTGTCCGGAAAATGTTCTCGGTGAAGGTGGCTATGGAATTGTTTATCATGGAGTACTCACTGATGGTACTAAAGTTGCTGTCAAAAACCTCTTGAATAACAAGGGCCAAGCAGAAAAAGAATTCAAAGTCGAGGTAGAAGCAATTGGTCGAGTGCGTCATAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATACGTCAACAATGGCAATCTAGAACAGTGGTTGCATGGAGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACGGCGAGAGGCTTGGCCTATCTTCACGAGGGTCTTGAACCGAAGGTTGTTCACCGAGATGTGAAATCAAGCAACATCCTCATTGATCGTCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCCAAGCTTTTGTGTTCCGAGAATAGTTATGTCACGACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATACGCTTGCACCGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATAACCGGGAGAAGTCCCGTCGATTATGCTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATCGAAAAGCTGAAGAAGTAGTTGATCCTAAACTACCCGAGTTGCCATCTTCAAAGGCTCTTAAACGCGCTCTACTAATCGCTCTTCGGTGTGTTGATCCAGATGCAACAAAAAGGCCTAAAATGGGACATGTCATTCACATGCTTGAGGCAGACGACCTATTATTCCACAATGATCGCAAAACTGGAGGAGAGTCTTCACGATCCTCCCTTCACGATTTTCAACAAGAGCACGAGAACTCGAGTTTGGACAAGAGAACAACAGATGAAGGAATCAGTGTTGAAAGTGAACATGGTAGTGGTAGAAGTAATCATCAACCTACTAGGGGTAGATGA 1494 0.4659 MSIFDGAFINTQLSKHTSIFGLRLWVVIGILIGVAIVFILFLISLCVVSRRRNHRRTGDYKIPGATPAKEIQQIVHIPGPHMLRRPAPANVPEIHVDIGRQEHRVVVKSDKVSSGESRGTAGSGCDTTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYARPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSSLHDFQQEHENSSLDKRTTDEGISVESEHGSGRSNHQPTRGR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01573 497 FunFam Putative receptor-like serine/threonine-protein kinase 240 449 - -
Vifa5g01573 497 ProSiteProfiles Protein kinase domain profile. 164 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01573 497 Pfam Protein kinase domain 168 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01573 497 MobiDBLite consensus disorder prediction 113 133 - -
Vifa5g01573 497 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524
Vifa5g01573 497 SMART serkin_6 164 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01573 497 Gene3D Transferase(Phosphotransferase) domain 1 240 448 - -
Vifa5g01573 497 MobiDBLite consensus disorder prediction 483 497 - -
Vifa5g01573 497 CDD STKc_IRAK 170 436 - -
Vifa5g01573 497 FunFam Probable serine/threonine-protein kinase At1g01540 144 239 - -
Vifa5g01573 497 MobiDBLite consensus disorder prediction 109 133 - -
Vifa5g01573 497 PANTHER OS01G0323000 PROTEIN 8 465 - -
Vifa5g01573 497 Gene3D Phosphorylase Kinase; domain 1 141 239 - -
Vifa5g01573 497 MobiDBLite consensus disorder prediction 445 482 - -
Vifa5g01573 497 MobiDBLite consensus disorder prediction 445 497 - -
Vifa5g01573 497 SUPERFAMILY Protein kinase-like (PK-like) 143 436 IPR011009 -
Vifa5g01573 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01573 Vifa-Chr5 455935917 455938904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01573 151 472 Trihelix Transcription Factor Family AT5G38560 46.037 1.65e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vifa5g01573 Pkinase 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01573 - - gmx:100817295 770.77