Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01570 ATGAAGAAGTATCCTCCAGGAACAATTTTAGAGCACAAGAGTGATATCACTGATTCTTGCTCTCAGATGATACTTCAGCTCCACGATGTCTATGATCCGAATAAGATAAATGTCAGGATTAAAATTATTTCTGGATCACCTTGCGGATCAGTGGCCGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTTTTAGACAAACATCTCAAACATGAGGAAAAGAGATGCATGGAAGAGTTGCAGTGTAACATTGTTGTTATGAAGCGTACTCAACCGAAAGTGCTTCGTTTGAACTTGATTGGAGCACAAAAGAAGGAAGTTGAAGAAGCTGGTACATCACCTTCTGAGCAAGGTGATATACCTGAAAAACAGTCCGAAAACAAGATGGATTCTGTAGTAGATTCTATCAAAGGACCGAATGTTACTCCGACTAGCAGCCCCGAGCTAGGGACGCCATTCACCGCTACTACTGAAGCCGGTACTTCATCAGCTTCAAGCTCAGATCCTGGAACTTCACCGTTCTGTATTCCAGAGATGAATGGTGAGACGAAGAGAGAAGAAACCATTAAGGAAAGTCATGAACTTTGTGATACATCAGACATAGAAAGTGAAAGTCTGTCGACATCTTCGGCTAGCTTTAGATACCAACCGTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAACGGAGAAAGATCAGAGGCGTATCATGGTATGCCTCAGGCAACTACAACCAAGGCTTTGCTAGAAAAGTATTCTAGGCTTGATAGAGGAGCTGGAATGGAAATGTCGGCAGCATATAGAAATGACTCGGATTTTAGTGGTAATTTAAGAGAAGCGATAGCATTATCAGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTTGATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCACTATCGGGGGATTTTCACAAGCCAACTTCTTGGAAGAAGGAGGGTATGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATGTCGAGTTTTGCTTTGAAGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTTCTGGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGAGATCCATTAGAATGGTCTGCGAGGCAGAAAATTGCTGTTGGAGCTGCTTGCGGGTTAAGGTATCTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGCCACATGAGGCCGAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGATTGGCAAGGTGGCAACCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACCGAAAAAGCCGATGTTTATTCCTTTGGGGTGGTATTGGTGGAGCTTGTTACCGGTAGAAAAGTTGTCGATCTCACTCGGCCAAAGGGACAACAGTGCCTAACTGAGTGGGCCCGGCCACTGTTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGACTTGGACGTCTCTATTTAGAACATGAAGTCTATTGCATGTTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTGTAGACCACGCATGTCACAGGTTCTCCGAATTCTAGAGGGAGACATGGTGATGGACACAAATTACATTTCAACTCCGGGCTATGATGTCGGAAATAGAAGTGGTCGCATTTGGTCAGAGCCACTGCAGAGACAGCATCATTACAGCGGTCCCCTCTTAGAAGATTCATTAGAGTCATCATTCAGTGGAAAGCTATCTCGTGACAAGTACAAACCTTTCTATTGGGATAGGAGTAGGGACAAGCCTTAA 2004 0.4401 MKKYPPGTILEHKSDITDSCSQMILQLHDVYDPNKINVRIKIISGSPCGSVAAEAKKGQASWVVLDKHLKHEEKRCMEELQCNIVVMKRTQPKVLRLNLIGAQKKEVEEAGTSPSEQGDIPEKQSENKMDSVVDSIKGPNVTPTSSPELGTPFTATTEAGTSSASSSDPGTSPFCIPEMNGETKREETIKESHELCDTSDIESESLSTSSASFRYQPWITELLLHQQSSQRNGERSEAYHGMPQATTTKALLEKYSRLDRGAGMEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCLICQHKAPVFGKPPRWFSYAELELTIGGFSQANFLEEGGYGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCFEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAACGLRYLHEECRVGCIIHRHMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKVVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRLGRLYLEHEVYCMLHAASLCIRRDPHCRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQHHYSGPLLEDSLESSFSGKLSRDKYKPFYWDRSRDKP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01570 667 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 299 402 - -
Vifa5g01570 667 SUPERFAMILY Protein kinase-like (PK-like) 311 606 IPR011009 -
Vifa5g01570 667 PANTHER OS01G0750732 PROTEIN 218 605 - -
Vifa5g01570 667 Pfam Protein tyrosine and serine/threonine kinase 331 539 IPR001245 GO:0004672|GO:0006468
Vifa5g01570 667 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 403 606 - -
Vifa5g01570 667 Gene3D Transferase(Phosphotransferase) domain 1 403 609 - -
Vifa5g01570 667 MobiDBLite consensus disorder prediction 137 173 - -
Vifa5g01570 667 Gene3D Phosphorylase Kinase; domain 1 300 402 - -
Vifa5g01570 667 MobiDBLite consensus disorder prediction 105 174 - -
Vifa5g01570 667 ProSiteProfiles Protein kinase domain profile. 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01570 667 CDD STKc_IRAK 335 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01570 Vifa-Chr5 455518867 455522051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01570 307 616 Trihelix Transcription Factor Family AT1G70460 49.843 1.98e-96 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa5g01570 PK_Tyr_Ser-Thr 4.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01570 - - cam:101503019 1172.92