Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01569 ATGTCTCTTGCTTCAGCTGATCGTAACAATATCCAAGGAGTTCTTACTCACGGTGGACGCTATGTTCAGTACAATATCTATGGAAACCTCTTTGAAGTCTCGAACAAGTATGTACCTCCTATCCGTCCTGTTGGAAGAGGAGCTTCTGGTATTGTCTGTGCTGCTGTAAATGCGGAGACACGCGAAGAAGTTGCTATTAAGAAGGTTGGCAATGCATTTGACAACAGAATTGATGCCAAAAGGACCTTAAGAGAAATTAAACTTCTCCGGCACATGGATCATGAAAATGTGATAGTCCTTAAGGACATTATACGGCCTCCACAGACAAACAATTTCAATGATGTTTACATTGTTTATGAGTTAATGGATACCGACCTCCATCAAATAATCCGTTCCAATCAACCATTGACGGATGATCATTGTCGGTTGTTACGAGGACTGAAATACGTACACTCGGCAAATATTCTGCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATTCCAATTGTGATCTTAAGATCGGAGACTTTGGTCTAGCTAGAACTACTCGTGAAACCGATTTCATGACTGAGTATGTGGTTACTCGCTGGTACCGAGCTCCAGAATTGCTTCTTAATTGCTCAGAATATACTGCAGCCATTGATATATGGTCAGTTGGTTGCATCCTCGGTGAAATCATGACAAGACAACCCCTATTTCCTGGGACAGATTATGTTCATCAGCTCAGATTGATCACAGAGCTCATAGGTTCCCCTGATGACACCAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATACGTAAAACAGCTTCCTCAATATCCAAAACAAGAATTTGCTGCTAGGTTTCCCAACATGTCTCCCGGTGCAGTCGATTTATTAGAGAGAATGCTTGTTTTTGATCCGAACAGACGCATTACAGTTGATGAGGCTCTGAGCCACCAATACTTGGCGCCGCTGCATGATATTAATGTGGAACCTGTTTGCTCTAGACCTTTCCATTTCGATTTTGAGAAACCGTCTTTCACCGAACAAGATATCAAGGAACTCATCTGGAAAGAATCTGTGAAGTTCAATCCTGATCCACCTATTTATTGA 1104 0.4212 MSLASADRNNIQGVLTHGGRYVQYNIYGNLFEVSNKYVPPIRPVGRGASGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVIVLKDIIRPPQTNNFNDVYIVYELMDTDLHQIIRSNQPLTDDHCRLLRGLKYVHSANILHRDLKPSNLLLNSNCDLKIGDFGLARTTRETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGTDYVHQLRLITELIGSPDDTSLGFLRSDNARRYVKQLPQYPKQEFAARFPNMSPGAVDLLERMLVFDPNRRITVDEALSHQYLAPLHDINVEPVCSRPFHFDFEKPSFTEQDIKELIWKESVKFNPDPPIY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01569 367 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Vifa5g01569 367 Pfam Protein kinase domain 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01569 367 ProSitePatterns MAP kinase signature. 73 171 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa5g01569 367 Gene3D Phosphorylase Kinase; domain 1 21 356 - -
Vifa5g01569 367 CDD STKc_TEY_MAPK 31 362 - -
Vifa5g01569 367 Gene3D Transferase(Phosphotransferase) domain 1 122 346 - -
Vifa5g01569 367 ProSiteProfiles Protein kinase domain profile. 38 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01569 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vifa5g01569 367 FunFam Mitogen-activated protein kinase 23 132 - -
Vifa5g01569 367 SUPERFAMILY Protein kinase-like (PK-like) 41 326 IPR011009 -
Vifa5g01569 367 SMART serkin_6 38 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01569 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 320 - -
Vifa5g01569 367 FunFam Mitogen-activated protein kinase 122 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01569 Vifa-Chr5 455463745 455465950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01569 4 362 MAP Kinase Gene Family AT4G01370 84.066 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa5g01569 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01569 K20600 - vvi:100852927 672.544