Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01566 ATGGAAGGAACAGAAGAGAGGGAGGAAAATGCTGCAGAACCGGAACCCAAAAACTCGGACGAGTCAACTCGTTCAGAACATGACAACGAAGAAGAAGATGAACCCGACGCGGTGGCGGTGGTTGAAGAGATCCAACGAGTCATCGAATCAGTTGTTCAATTCGGCGAATATCGAAGAATGCAAAGGAAGGAATCGCACAATCTCGTTCGTCGTTTCAAACACATGTTGCCGCTTATGGAAGACCTTCGTGACCTTCATCAACCTGTTCCTCAAAACGGTGTCGCTTGGTTGAAGAGCCTTAGGGATGCGCTTTTGTTCGCTAAGGATTTGTTGAAATTGTGCAGCGAAGGAAGCAAAATTCACCTCGCATTGGAGGGTGAGGCTGTTATGATCAAATTTCAGAAGGTTTATAAAAAGTTAAGCCGAGCTTTTAAGGGTGTGCCTTTTGAAGAATTAGGAATCTCCGATGAAGTGAAAGAACAGCTAGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGGACAGATACACAAGACATAGAGTTAGCAATGGATATGATGGTCGTGTTCTCCGACGAAGATGATCGAAATGCCGATAGTGCTATTGTCGAAAGGCTTGCAAAAAAGTTGGAACTTCATAGTGTTGAGGATCTTGAGGTGGAAACAGTGGCTGTTGGATACCTTGCTAGAGAAAGAAAGGGACAACAAGAAGAGAGCACACAGAAAATAATTGGCCTTCTTAACAAATTCAAAAGGATTGCAGGTATGGAAGAAACTGGTGTTGTTATAGATGATGATCCTGCCATGCCTAATAAGAGGTTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTTTGTCCAATAACACTTGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCACAAGTCTTGCCCAAAGACAAGGCAACCACTGGAACATCTCCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGCTGAATGGTGTGAGAAACACAACTTCAAACTTCCAAAAATCTGCACTTCCTGTCAAGAAACAACTTCGACTGGAAACCAAGACGCAATTCCATCTTTGGTTGAAAGTCTATGGTCAATCAACTTAGAACATCAAAGAAAGGCGGTCGAGAGAATACGCTTGTTATCGAAAGAAAATTCAGAGAACAGAATTTTAGTTGCCGAGCATGGAGGAATACCGCCATTAGTGCAATTACTATCCTATCCAGATTCAAAAATAAAGGAACATGCTGTTACAGCACTTTTGAATCTGTCAATTGATGAAGGTAACAAAAAACTCATATCCAAAGAAGGTGCTATTCCAGCTATAATAGAAGTTCTGCAAAATGGAAGTATTGTAGCTAAAGAAAACTCAGCAGCCGCTTTATTCAGCTTATCAATGATTGATGAAAACAAAGAGCTTGTTGGAATGTCAAATGGGATTCAACCTTTGGTAAAGTTACTACAAAGTGGAACAGTTAGAGGAAAAAAAGATGCAGCTACAGCACTTTTTAGCTTATCATTGAACCATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTGACACCTTTACTTGAATTGTTAAAGGACAAAAATTTGGGAATGGTGGATGAAGCACTATCTATTTTATTACTACTTGTGTTGAATTATGAAGGGAGACAAGCGATTGGACAGTTACCTTTCATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTACTTCTTGAGTTGTGTACAAGTAATTCTTCTTTTACATTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTAATTGAGATTAAAGAAAGTGGTACAAATAGAGCACAGAGAAAAGCAAATGCAATTTTAGATCTCATAAGCAAGAGTGAGCAAATTTAA 1968 0.3984 MEGTEEREENAAEPEPKNSDESTRSEHDNEEEDEPDAVAVVEEIQRVIESVVQFGEYRRMQRKESHNLVRRFKHMLPLMEDLRDLHQPVPQNGVAWLKSLRDALLFAKDLLKLCSEGSKIHLALEGEAVMIKFQKVYKKLSRAFKGVPFEELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIVERLAKKLELHSVEDLEVETVAVGYLARERKGQQEESTQKIIGLLNKFKRIAGMEETGVVIDDDPAMPNKRFGRSTSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFKSNHKSCPKTRQPLEHLQLAPNCALKNLIAEWCEKHNFKLPKICTSCQETTSTGNQDAIPSLVESLWSINLEHQRKAVERIRLLSKENSENRILVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEGNKKLISKEGAIPAIIEVLQNGSIVAKENSAAALFSLSMIDENKELVGMSNGIQPLVKLLQSGTVRGKKDAATALFSLSLNHANKDRAIRAGIVTPLLELLKDKNLGMVDEALSILLLLVLNYEGRQAIGQLPFIETLVEFTREGTPKNKECAASVLLELCTSNSSFTLAALQFGVYEHLIEIKESGTNRAQRKANAILDLISKSEQI 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01566 655 PANTHER U BOX DOMAIN-CONTAINING 60 649 - -
Vifa5g01566 655 MobiDBLite consensus disorder prediction 1 37 - -
Vifa5g01566 655 SMART arm_5 446 486 IPR000225 GO:0005515
Vifa5g01566 655 SMART arm_5 487 527 IPR000225 GO:0005515
Vifa5g01566 655 SMART arm_5 569 609 IPR000225 GO:0005515
Vifa5g01566 655 SMART arm_5 405 445 IPR000225 GO:0005515
Vifa5g01566 655 SMART arm_5 528 568 IPR000225 GO:0005515
Vifa5g01566 655 SUPERFAMILY RING/U-box 282 359 - -
Vifa5g01566 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Vifa5g01566 655 FunFam RING-type E3 ubiquitin transferase 279 356 - -
Vifa5g01566 655 Pfam U-box domain 283 354 IPR003613 GO:0004842|GO:0016567
Vifa5g01566 655 CDD RING-Ubox_PUB 284 336 IPR045210 -
Vifa5g01566 655 SUPERFAMILY ARM repeat 372 649 IPR016024 -
Vifa5g01566 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515
Vifa5g01566 655 FunFam RING-type E3 ubiquitin transferase 37 150 - -
Vifa5g01566 655 Coils Coil 155 175 - -
Vifa5g01566 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Vifa5g01566 655 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Vifa5g01566 655 FunFam RING-type E3 ubiquitin transferase 361 655 - -
Vifa5g01566 655 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Vifa5g01566 655 Pfam Armadillo/beta-catenin-like repeat 488 526 IPR000225 GO:0005515
Vifa5g01566 655 Pfam Armadillo/beta-catenin-like repeat 405 444 IPR000225 GO:0005515
Vifa5g01566 655 Gene3D - 357 654 IPR011989 -
Vifa5g01566 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 356 IPR013083 -
Vifa5g01566 655 Gene3D - 36 150 IPR036537 GO:0007166
Vifa5g01566 655 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01566 Vifa-Chr5 455443004 455446712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01566 39 655 U-box Gene Family AT5G42340 62.237 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01566 - - psat:127127055 1170.61