Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01565 ATGGATACACTCACTCTATGTGCAGCATCTTCTTCTTCTCCTTGCAGTTCAAGTTCAAGAACAAGGTTGTGCACTTACCATGTGTTTTTGAGTTTTAGAGGACAAGATACACGCAAAGGATTCACCGATCATCTATGTGCTTCCCTTGAAAGAAGGGGGATCACAACTTTCAGAGATGACAAAGATCTTGAGAGAGGACAAGTCATTTCACAAAAGCTAATCAACGCAATTCAAGATTCTATGTTTGCCATCACTATTCTCTCACCAGATTATGCTTCTTCCACTTGGTGTTTGGATGAGTTACAAATGATCATGGAGTGCAGCAGCAACAACAACCTGCAAGTTTTTCCAGTCTTCTATGGTGTGGACCCGTCTGATGTTCGGCATCAAAGAGGAAGCTATGAGGATGCTTTCAGAAAACATCAAGAGAAATTTGGTCAACAAAGTGACAGGGTTCAAAGATGGAGAGATGCTTTAACACAAGTTTCCAGTTACTCTGGATGGGACTCCAAGGACCAGCATGAGGCATCACTAGTGGAAAACATTGCTCAACACATACATAGAAAGTTGGTTCCTAAATTACCATCTTGCACAGAGAATCTTGTTGGGATTTCTTCAAAGGTGGATGAAGTGAACAAGCTCATAGGTATGCAGTTAAAAGATGTTCGCTTTATAGGCATATGGGGTATGGGTGGCATAGGCAAAACAACTATTGCTAGATCTGTCTATAAAGCAATCCAAGGTGAATTTGAACTCACTTGCTTTCTTGAAAATGTAAGAGAGTTATCTGAGACTAACGGTTTAGTTCACATTCAAAGACAACTTCTTTCTCATCTGAGTATAAGTAGGAACGATTTTCATAATTTGTATGATGGGAAAAACACGATACTGAACTCTTTATGCAGAAAAAAAGTTCTCCTTGTTCTTGATGATGTGAATGATGTAAACCAATTGGAGAGTTTAGCCGGGAAACAAGATTGGTTTGGTCCAGGAAGTAGAGTAATTATCACAACTAGAGATAAACACTTGCTAGTGACACATGGAGTACATAAAACTTATGAAGTTGGAATGCTATTCCAAAAAGAAGCCCTTAATCTCTTTTGTTTGAAAGCCTTTAAAGGAGATAAACCACTAGAAGGGTATTTGGATTTGTCCAAAGAAGTGGTGGACTATACTGGTGGTCTTCCGTTGGCACTCGAGGTGTTAGGTTCCTATCTCTATGGAAGACATGTCGATGTTTGGCATAGTGCAATAAAGAAGATAAGAAGTGTTCCCCACCCTAAAATCCAAGATAAACTGAAAATAAGTTATGAGAGTTTAGATCCCATGGAGAAGGATATTTTTCTAGATATTGCCTGTTTCTTCAAGGGAATGAAGATAGATAAAGTAATAGATTTATTAGAAAGTTGCGGTTATTTCCCTCAAATTGGAATCGAAATTTTGATTGAAAGATCTTTGATAACTATAGATTGCAGGAATGATAAACTTGATATGCATGATTTGCTTCAAGAAATGGGAAGGGATATTGTATTTCAGGAATCTCCGAATGATCCAAGCAGACGAAGTAGGTTATGGTCCCAAGAGGATATTGATCATGTGTTGACAAAAAATAAGGGAACTGAAGCGATTAACAGCATAGCTATGAAGTTACTTCAACCATATGAAGCATGTTGGAGCACTGAAGCATTCTTTAAGACAAGTCAGCTAAAATATCTCAGTTTATGCGAGATGCAACTTCCCCTCGGTCTCAGTTGCCTCCCTAGTTCTTTGAAAGTTCTTCGGTGGAGAGGATGTCCTTTGAAAGTTTTGCCACTAACAACTCAACTCGATGAAGTTGTTAACATTAAACTATCTCATAGCAAACTTCAACAACTTTGGCAAGGAATAAAGTTTATCGAAAAGCTGAAGTACTTGAATATGGCTTTTTCCAAGAACCTAAAGAGATTGCCTGATTTTTCCGGTGTTCCAAATCTTGAAAATTTGATTCTTAAAGGATGCGCAAGCCTAAACGAAGTTCATCCATCCCTTATACATCACAAGAAAGTTGTTTTGATGGATTTCGAAAACTGCAAAAGTCTTAAATCTCTTCCAGGGAAATTGGAGATGAGTTCTCTGAAGATGTTAACTCTTTCTGGCTGTTCCGAATTTAAATTCCTTCCAGAGTTTGGGGAAAACATGGAAAACCTATTGATACTTGCTTTACAAGGAACAGCTATAAGAAAACTACCCTCATCACTTGGTTGCCTAGTTGGACTTAAAAACTTGAACTTAAAGGACTGCAAGAGTCTTGTTTGCATTCCAGATACCATTCATTTATTGAATTCCCTCATAACGTTGGACGTTTCTGGATGTTCGAAACTTTGTAGATTGCCAGATGGTTTAAAGGAAATCAAGAGTTTGGAGGAACTCCTTGCCGATGATACTGCTATTGATGAACTACCTTCCTCTGTTTTTTATCTAGAGAGACTTAAAGTATTATCATTTTCCGGTTGCAAAGGTTCATTAACCAAGTCGACGAACTGGTTTCTTCCCTTCAATTGGATGTTTGGGAGTCAACCAGATTCCACTGGATTCAGATTTCCAACTTCCGTCTTGAGTCTACCCTCTTTGAGAAATATAAATCTAAGTTACTGTAACCTTTCTGACGAATCAATACCAGATTATTTTCGCCACCTATCATCGTTGAGGTCTTTGAATCTAACTGGTAACAATTTTGTTAGCATACCGAGCGCAATTTCTAAACTTCCGCGATTGGATTTGCTTACTCTAAATTACTGCCAGAAGCTTCAATTGTTGCCAGAGCTTGCATCAAGTATGACACGGTTGGATGCAAGCAATTGTGATTCACTGGAAACTACGAAATTTAATCCAGCAAAGCCATGTGGTCTCTTTGCATCACCTAGACGACTAAACAATGTTCAAAAACTTTTTAACAGCTTTATGGAGGCATGTTGTCTTCCTTCTGCAAGATTTGACATGCTTATCCCTGGGGAAGGAATTCCATCTTGGTTTGTTCCTCAAAGAACAGTTTCTTGGGCAAAAATACAAGTTCCTAACAATTGTCCTTTAGATGATTGGGTAGGATTTTCTCTGTGTTTTCTGTTAGTGAGTTATTATGCTGACCCAGAACAATGCAAGCATGAGATTGAATGTTATTTGTTTGCACCTAATGGCAAGAAGTTGATCAGCACCAGAAGATTACCTCCTATGAATCCATGTTATCCTCATCTTTATATTCTCTACTTGTCCATTGATCAATTTCGCGACAAAATACTCAAAGATGATTGCTGGAGTGACATTGAATTTGCATTGAAATGTTATTGCTGTCAATCGCTGCAAATAGTGAGGTGTGGTTCGCGATTGGTATGTAAGCAAGATGTTGAAGATTGGAACAAAGTGAAGAGTCAATTCAATGCGAGTTGA 3423 0.3833 MDTLTLCAASSSSPCSSSSRTRLCTYHVFLSFRGQDTRKGFTDHLCASLERRGITTFRDDKDLERGQVISQKLINAIQDSMFAITILSPDYASSTWCLDELQMIMECSSNNNLQVFPVFYGVDPSDVRHQRGSYEDAFRKHQEKFGQQSDRVQRWRDALTQVSSYSGWDSKDQHEASLVENIAQHIHRKLVPKLPSCTENLVGISSKVDEVNKLIGMQLKDVRFIGIWGMGGIGKTTIARSVYKAIQGEFELTCFLENVRELSETNGLVHIQRQLLSHLSISRNDFHNLYDGKNTILNSLCRKKVLLVLDDVNDVNQLESLAGKQDWFGPGSRVIITTRDKHLLVTHGVHKTYEVGMLFQKEALNLFCLKAFKGDKPLEGYLDLSKEVVDYTGGLPLALEVLGSYLYGRHVDVWHSAIKKIRSVPHPKIQDKLKISYESLDPMEKDIFLDIACFFKGMKIDKVIDLLESCGYFPQIGIEILIERSLITIDCRNDKLDMHDLLQEMGRDIVFQESPNDPSRRSRLWSQEDIDHVLTKNKGTEAINSIAMKLLQPYEACWSTEAFFKTSQLKYLSLCEMQLPLGLSCLPSSLKVLRWRGCPLKVLPLTTQLDEVVNIKLSHSKLQQLWQGIKFIEKLKYLNMAFSKNLKRLPDFSGVPNLENLILKGCASLNEVHPSLIHHKKVVLMDFENCKSLKSLPGKLEMSSLKMLTLSGCSEFKFLPEFGENMENLLILALQGTAIRKLPSSLGCLVGLKNLNLKDCKSLVCIPDTIHLLNSLITLDVSGCSKLCRLPDGLKEIKSLEELLADDTAIDELPSSVFYLERLKVLSFSGCKGSLTKSTNWFLPFNWMFGSQPDSTGFRFPTSVLSLPSLRNINLSYCNLSDESIPDYFRHLSSLRSLNLTGNNFVSIPSAISKLPRLDLLTLNYCQKLQLLPELASSMTRLDASNCDSLETTKFNPAKPCGLFASPRRLNNVQKLFNSFMEACCLPSARFDMLIPGEGIPSWFVPQRTVSWAKIQVPNNCPLDDWVGFSLCFLLVSYYADPEQCKHEIECYLFAPNGKKLISTRRLPPMNPCYPHLYILYLSIDQFRDKILKDDCWSDIEFALKCYCCQSLQIVRCGSRLVCKQDVEDWNKVKSQFNAS 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01565 1140 Gene3D - 188 352 IPR027417 -
Vifa5g01565 1140 Pfam NB-ARC domain 212 440 IPR002182 GO:0043531
Vifa5g01565 1140 Gene3D Ribonuclease Inhibitor 851 979 IPR032675 -
Vifa5g01565 1140 ProSiteProfiles TIR domain profile. 24 190 IPR000157 GO:0007165
Vifa5g01565 1140 Gene3D - 358 441 IPR042197 -
Vifa5g01565 1140 PRINTS Disease resistance protein signature 299 313 - -
Vifa5g01565 1140 PRINTS Disease resistance protein signature 700 716 - -
Vifa5g01565 1140 PRINTS Disease resistance protein signature 224 239 - -
Vifa5g01565 1140 PRINTS Disease resistance protein signature 392 406 - -
Vifa5g01565 1140 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 720 IPR044974 GO:0006952
Vifa5g01565 1140 Pfam TIR domain 26 203 IPR000157 GO:0007165
Vifa5g01565 1140 SUPERFAMILY RNI-like 860 1096 - -
Vifa5g01565 1140 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 168 IPR035897 -
Vifa5g01565 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 451 IPR027417 -
Vifa5g01565 1140 SMART LRR_typ_2 797 820 IPR003591 -
Vifa5g01565 1140 SMART LRR_typ_2 892 915 IPR003591 -
Vifa5g01565 1140 SMART LRR_typ_2 867 891 IPR003591 -
Vifa5g01565 1140 SMART LRR_typ_2 726 749 IPR003591 -
Vifa5g01565 1140 Pfam C-JID domain 995 1128 IPR045344 -
Vifa5g01565 1140 Gene3D - 23 187 IPR035897 -
Vifa5g01565 1140 SUPERFAMILY L domain-like 498 837 - -
Vifa5g01565 1140 SMART till_3 25 165 IPR000157 GO:0007165
Vifa5g01565 1140 ProSiteProfiles Leucine-rich repeat profile. 894 916 IPR001611 GO:0005515
Vifa5g01565 1140 Pfam Leucine rich repeat 868 927 IPR001611 GO:0005515
Vifa5g01565 1140 Gene3D Ribonuclease Inhibitor 557 700 IPR032675 -
Vifa5g01565 1140 Gene3D Ribonuclease Inhibitor 701 844 IPR032675 -
Vifa5g01565 1140 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01565 Vifa-Chr5 455288688 455292535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01565 26 828 WRKY Transcription Factor Family AT4G12020 32.082 8.06e-110 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01565 - - gmx:100815486 1506.12