Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01561 ATGGGATTCCCCATAGGGTACCCTGCAGTTTCCGTCCCCAACCTCTTCCTTCTCCTTCTCTCTCTCCTCGCTTTTCTACGATCGCTAGCCATCTCCTTCCTCTCTCTCCTCCATCTCTCCGACCTCCTCGACACCAATTTCTCCTCCGCCACCTTAACGGAACCACTCTCCAACCCTCCCACCCTCTCCGCAATCCTCATCCGCCAATTCCTCCCCGTCGTCAGTTACCGTGACCTAGATTTGCCGGCGGTAGCGTGCGCGGTGTGTCTGGACGAATTTACCGAAGAGGAAGAGATCAGGTGTATGACGAATTGTAAACATATTTTTCACAAGACGTGTGTGGACCGTTGGATTGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCACTTTGTACCTTGTGCTAAAATAGAAGATTATAATCAACGCTTATGGGCGGCTTGTCAATCTGAATGTGAAGACGATGATGATTCTCCTTTTTCGCAACATGATGACGATTACTACATTGCTTCAATTTGA 522 0.4904 MGFPIGYPAVSVPNLFLLLLSLLAFLRSLAISFLSLLHLSDLLDTNFSSATLTEPLSNPPTLSAILIRQFLPVVSYRDLDLPAVACAVCLDEFTEEEEIRCMTNCKHIFHKTCVDRWIDHDQKTCPLCRTHFVPCAKIEDYNQRLWAACQSECEDDDDSPFSQHDDDYYIASI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01561 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 133 IPR013083 -
Vifa5g01561 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 148 - -
Vifa5g01561 173 Pfam Ring finger domain 86 129 IPR001841 -
Vifa5g01561 173 SMART ring_2 86 128 IPR001841 -
Vifa5g01561 173 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Vifa5g01561 173 SUPERFAMILY RING/U-box 66 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01561 Vifa-Chr5 453238246 453238767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01561 1 159 C3H Transcription Factor Family AT1G63840 42.012 1.39e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01561 K16281 - gmx:100813224 182.956