Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01555 ATGGGATTCCCCATAAGCTACCCTGAAGTTTCCGTTTCCAATCTCTTCCTTCACCTTCTCTCTCTCCTCGCCGTTCTACGATCCCTAGCCATCTCCTTCCTCTCTCTCCTCCATCTCTCCGACCTCCTTAACACCGCTTTCTCCACCGACGTCTTACCGGAATCACACTCCGACCATCCCACCCTCTCCGCAACCCTCATCCGCGAATTCCTCCCCGTTGTTAATTTCCGAGACCTCGCCGAAGATTCGAAATCGGTGGAGTGCGCGGTGTGTCTGAATGAATTTTCCGGAGATGAAGAGATCAGGTGTATGACGAATTGTAAACATATTTTTCACAAGACGTGTGTGGACCGTTGGATTGATCATGATCAGAAAACGTGTCCGCTTTGTAGGACCCACTTTGTACCTTGTGCTAAAATAGAAGATTATAATCAACGCTTATGGGCGGCTTGTCAATCTGAATGTGAAGAATATGATGAGGATGTTGCTCTTTTTGCTCAACATGATGATGATCACTTGATTGCTTCACTTTGA 534 0.47 MGFPISYPEVSVSNLFLHLLSLLAVLRSLAISFLSLLHLSDLLNTAFSTDVLPESHSDHPTLSATLIREFLPVVNFRDLAEDSKSVECAVCLNEFSGDEEIRCMTNCKHIFHKTCVDRWIDHDQKTCPLCRTHFVPCAKIEDYNQRLWAACQSECEEYDEDVALFAQHDDDHLIASL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01555 177 PANTHER - 20 165 - -
Vifa5g01555 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Vifa5g01555 177 SMART ring_2 88 130 IPR001841 -
Vifa5g01555 177 Pfam Ring finger domain 87 131 IPR001841 -
Vifa5g01555 177 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Vifa5g01555 177 SUPERFAMILY RING/U-box 87 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01555 Vifa-Chr5 452160276 452160809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01555 1 149 C3H Transcription Factor Family AT1G63840 42.105 2.34e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01555 K16281 - gmx:100813224 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01555 5 452160276 452160809 Vifa5g01555 5 452160276 452160809 ECH