Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01554 ATGGAATTCTCTATAGGCTACCTTTCAGTTTCCGTTCCCAATCTTTTTCTTCACCTATTCTCTCTCCTCGACTTCCTAAGATCCCTTGCCATCTCCTTGCTCTCTCTCCTCCACCTCTCCGACCTCCTCGACGCCGCAGATGAAGAGATCAGGTGTATCACGAATTATAAACATATTTTTCACAAGACCTGTGTGGACCGTTGGATTGATCATGACCAGAAGACGTGTCCGCTTTGTAAGACCCACTTTATACCTTGTGGTAAAATGGAAGATTATAATCAACGCTTATGTACGGCTTGTCAATCTGAATGTGAAGAATATAACGAGGATGTTGCTCTTTTTGCTCAACATGATGATGATCACTTGATTGCTTCACTTTGA 381 0.4252 MEFSIGYLSVSVPNLFLHLFSLLDFLRSLAISLLSLLHLSDLLDAADEEIRCITNYKHIFHKTCVDRWIDHDQKTCPLCKTHFIPCGKMEDYNQRLCTACQSECEEYNEDVALFAQHDDDHLIASL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01554 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 84 IPR013083 -
Vifa5g01554 126 Pfam Ring finger domain 57 80 IPR001841 -
Vifa5g01554 126 SUPERFAMILY RING/U-box 47 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01554 Vifa-Chr5 452050813 452051193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01554 1 96 C3H Transcription Factor Family AT1G63840 28.188 3.45e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01554 K16281 - gmx:100813224 93.5893